Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0411 | ATGGTGCATTCAAAGAAGTTCAGAGGTGTCAGGCAACGACACTGGGGTTCATGGGTCTCTGAAATCCGTCACCCTTTGCTAAAAAGAAGGGTTTGGTTAGGAACCTTTGAGACAGCTGAAGAAGCAGCTAGAGCTTATGATCAAGCTGCCATTTTAATGAGTGGTCGAAATGCCAAAACCAACTTCCCTGTAAACAACAATCAAACTTCCCACGAAGAAAAGGGTCACGACTCGGGCTCTGATACCATGTTAACAACAACGACAACGTCTATCCCAAAGGGCTTATCGGAGATCCTCCACGCGAAGTTGAGGAAATGTAGCAAGGTTCCATCTCCTTCAATGACGTGTTTGAGGCTTGACACTGAGAATTCCCACATTGGTGTTTGGCAGAAGCGAGCTGGGCAGCGTTCTGGCTCTGACTCCAATTGGGTCATGACTGTTCAGTTAGGAAAGACGATAACGACAACGACGACGATGAAAAGTAACGACAATAATGATAATGGTGGTGGTGATGATGATGATTTGCAGAATGGTTGTTTCTCATCTTCTCCAATGACGATTTCTCATTCTCCTCCATCTCCAATGGGAGATGAAACTCAACAGCTGCAAACCCAAATGGATGAAGAAGAAAGAATTGCTCTACAAATGATAGAGGAATTGCTCAATAGAAATTGCCCAAGCCCATCTTTTGAATTTCAAGAAGGGGAAGCAAGCTTTGACCCTCTTACTTAA | 732 | 44.26 | MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVNNNQTSHEEKGHDSGSDTMLTTTTTSIPKGLSEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGQRSGSDSNWVMTVQLGKTITTTTTMKSNDNNDNGGGDDDDLQNGCFSSSPMTISHSPPSPMGDETQQLQTQMDEEERIALQMIEELLNRNCPSPSFEFQEGEASFDPLT | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3283636 | 3284444 | + | evm.model.ptg000016l.749 | HCH10g0411 | 552484 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0411 | 243 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 152 | IPR050913 | - | |
HCH10g0411 | 243 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0411 | 243 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0411 | 243 | MobiDBLite | consensus disorder prediction | 155 | 205 | - | - | |
HCH10g0411 | 243 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0411 | 243 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) | |
HCH10g0411 | 243 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0411 | 243 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0411 | 243 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 65 | - | - | |
HCH10g0411 | 243 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0411 | 243 | MobiDBLite | consensus disorder prediction | 176 | 205 | - | - | |
HCH10g0411 | 243 | Pfam | AP2 domain | 6 | 53 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0411 | HCH-Chr10:3283636 | HCH12g0399 | HCH-Chr12:2281322 | 3.00E-25 | dispersed | |
HCH10g0411 | HCH-Chr10:3283636 | HCH12g0362 | HCH-Chr12:2069438 | 5.40E-59 | wgd | |
HCH10g0411 | HCH-Chr10:3283636 | HCH6g0220 | HCH-Chr6:2884158 | 1.10E-51 | wgd | |
HCH10g0411 | HCH-Chr10:3283636 | HCH8g0837 | HCH-Chr8:44874741 | 2.40E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32433 | PF00847 | AP2 | 1.00E-12 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0411 | - | - | - | 0.0 |