Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0411 ATGGTGCATTCAAAGAAGTTCAGAGGTGTCAGGCAACGACACTGGGGTTCATGGGTCTCTGAAATCCGTCACCCTTTGCTAAAAAGAAGGGTTTGGTTAGGAACCTTTGAGACAGCTGAAGAAGCAGCTAGAGCTTATGATCAAGCTGCCATTTTAATGAGTGGTCGAAATGCCAAAACCAACTTCCCTGTAAACAACAATCAAACTTCCCACGAAGAAAAGGGTCACGACTCGGGCTCTGATACCATGTTAACAACAACGACAACGTCTATCCCAAAGGGCTTATCGGAGATCCTCCACGCGAAGTTGAGGAAATGTAGCAAGGTTCCATCTCCTTCAATGACGTGTTTGAGGCTTGACACTGAGAATTCCCACATTGGTGTTTGGCAGAAGCGAGCTGGGCAGCGTTCTGGCTCTGACTCCAATTGGGTCATGACTGTTCAGTTAGGAAAGACGATAACGACAACGACGACGATGAAAAGTAACGACAATAATGATAATGGTGGTGGTGATGATGATGATTTGCAGAATGGTTGTTTCTCATCTTCTCCAATGACGATTTCTCATTCTCCTCCATCTCCAATGGGAGATGAAACTCAACAGCTGCAAACCCAAATGGATGAAGAAGAAAGAATTGCTCTACAAATGATAGAGGAATTGCTCAATAGAAATTGCCCAAGCCCATCTTTTGAATTTCAAGAAGGGGAAGCAAGCTTTGACCCTCTTACTTAA 732 44.26 MVHSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVNNNQTSHEEKGHDSGSDTMLTTTTTSIPKGLSEILHAKLRKCSKVPSPSMTCLRLDTENSHIGVWQKRAGQRSGSDSNWVMTVQLGKTITTTTTMKSNDNNDNGGGDDDDLQNGCFSSSPMTISHSPPSPMGDETQQLQTQMDEEERIALQMIEELLNRNCPSPSFEFQEGEASFDPLT 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3283636 3284444 + evm.model.ptg000016l.749 HCH10g0411 552484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0411 243 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 152 IPR050913 -
HCH10g0411 243 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0411 243 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0411 243 MobiDBLite consensus disorder prediction 155 205 - -
HCH10g0411 243 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0411 243 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
HCH10g0411 243 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0411 243 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0411 243 FunFam Ethylene-responsive transcription factor 2 5 65 - -
HCH10g0411 243 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0411 243 MobiDBLite consensus disorder prediction 176 205 - -
HCH10g0411 243 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0411 HCH-Chr10:3283636 HCH12g0399 HCH-Chr12:2281322 3.00E-25 dispersed
HCH10g0411 HCH-Chr10:3283636 HCH12g0362 HCH-Chr12:2069438 5.40E-59 wgd
HCH10g0411 HCH-Chr10:3283636 HCH6g0220 HCH-Chr6:2884158 1.10E-51 wgd
HCH10g0411 HCH-Chr10:3283636 HCH8g0837 HCH-Chr8:44874741 2.40E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32433 PF00847 AP2 1.00E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0411 - - - 0.0