Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0432 ATGGCAACCATAATAACCAGAGATGAATCCGATTACGATAGTAGTTGCTCCTCCATAACAGTCCCTGACTCCAGCCAGAGCTGGATGAGCAACCTTAGCTTCGGCAGCCTCCGCCGTAGCAGCTCCGTCTCTCTCTCTACTTACTCCGCCCCAGACAGTGGCTCGGCCTCTCATCACAAACCCCACAAAGCTAACCAAGCTGCATGGGAAGCCATGCGGTGGCTCCGGGGAGTGAAAGGGCGTGTTGGGTTGGAGCATTTTCGGTTGCTCCGCCGTGTGGGAAGCGGAGATATAGGGAATGTTTATCTTTGTCAGATAAGGAATCCGATGGTGGGTTTGCCGCAGTGTTTTTATGCGATGAAAGTTGTTGATAGAGAAGCTTTGGCAATAAGGAATAAGCTTAGAAGAGCTGAAATGGAGAAGGAGATTTTGATGTTGCTTGATCACCCTTTTTTGCCTACTCTTTATGCTGAGTTTGAAGCTTCTCATTATTCCTGCTTGGTTATGGAGTTTTGTCCCGGTGGTGATTTGTATGCCGCTCGCCAACGCCAGCCCGGAAAACGCTTCTCGATTTCTTCTGCTAAGTTTTATGCAGCAGAGATTATCTTAGCGTTAGAGTATTTGCATATGATGGGAATAGTTTACAGAGATTTGAAGCCAGAAAATGTGCTCGTTAGAGAAGATGGTCACATAATGCTTTCAGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCGAAGCTCATCCGGAGCCGAACCAACTCCGACGCCATTAAAAAGCACGTTAAAAGTTACACATCTGTTCCTTCCTGTGCCGCCGCTCCAATTCAGCCGGTGCTCTCTTGTTTCTCCGCTGCCAGGAGGAAGAAACCGACTACCGTCACGACGATAACGGAGCATGTCGATGGCGGCCAGCTGCCTCCAGAAGAAGAACAACTCGATCCCGAGCCGGAATTGGTAGCAGAGCCGATCAACGCTCGATCGAAATCCTTCGTCGGAACACACGAATACTTGGCACCGGAGGTGATTTCCGGCCAAGGACACGGAAGCGCCGTCGACTGGTGGACTTTGGGGATCTTCCTTTATGAAATGCTGTTTGGGAGGACCCCATTTAAAGGAGAAAACAATGAGAAAACCCTAATCAACATCCTTAAGCAGCCATTGAAATTTCCAAGAATAGGGTTTAGTAGCAGTAAAGAGTATGAAGAAATGGTGAGAGTTGAGGATCTAATAAGCAAGCTTTTGGTGAAGAATCCAAAGAAGAGAATTGGAAGCTTAAAGGGGTCAGTTGAGGTCAAAAGGCATGAGTTCTTCAAAGGGGTTAATTGGGCTCTAATTAGGTCAATTAGGCCACCCCATGTCCCTAATAGTGATTTACATCACAATATTAACAAAAGATACTCAGCTAATTACTTACCCAAGTTGAGCAAGAAAGAGAGACAAGAACCCTACCAAATCCCACCTTCTCACCATTTCGATTATTTCTAA 1488 46.77 MATIITRDESDYDSSCSSITVPDSSQSWMSNLSFGSLRRSSSVSLSTYSAPDSGSASHHKPHKANQAAWEAMRWLRGVKGRVGLEHFRLLRRVGSGDIGNVYLCQIRNPMVGLPQCFYAMKVVDREALAIRNKLRRAEMEKEILMLLDHPFLPTLYAEFEASHYSCLVMEFCPGGDLYAARQRQPGKRFSISSAKFYAAEIILALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRSRTNSDAIKKHVKSYTSVPSCAAAPIQPVLSCFSAARRKKPTTVTTITEHVDGGQLPPEEEQLDPEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTLGIFLYEMLFGRTPFKGENNEKTLINILKQPLKFPRIGFSSSKEYEEMVRVEDLISKLLVKNPKKRIGSLKGSVEVKRHEFFKGVNWALIRSIRPPHVPNSDLHHNINKRYSANYLPKLSKKERQEPYQIPPSHHFDYF 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3449487 3451284 - evm.model.ptg000016l.728 HCH10g0432 552505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0432 495 Coils Coil 120 140 - -
HCH10g0432 495 FunFam serine/threonine-protein kinase D6PK-like 326 456 - -
HCH10g0432 495 Gene3D Transferase(Phosphotransferase) domain 1 172 241 - -
HCH10g0432 495 FunFam protein kinase PINOID 172 240 - -
HCH10g0432 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0432 495 Gene3D Phosphorylase Kinase; domain 1 85 171 - -
HCH10g0432 495 PANTHER FLIPPASE KINASE 1-RELATED 37 461 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH10g0432 495 CDD STKc_phototropin_like 86 455 - -
HCH10g0432 495 ProSiteProfiles AGC-kinase C-terminal domain profile. 439 495 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0432 495 SUPERFAMILY Protein kinase-like (PK-like) 68 463 IPR011009 -
HCH10g0432 495 SMART serkin_6 87 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0432 495 FunFam protein kinase PINOID 2 85 171 - -
HCH10g0432 495 Pfam Protein kinase domain 328 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0432 495 Pfam Protein kinase domain 88 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0432 495 ProSiteProfiles Protein kinase domain profile. 87 438 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0432 495 Gene3D Transferase(Phosphotransferase) domain 1 326 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0432 HCH-Chr10:3449487 HCH14g0744 HCH-Chr14:35712754 1.20E-118 dispersed
HCH10g0432 HCH-Chr10:3449487 HCH3g1038 HCH-Chr3:14475731 2.50E-119 transposed
HCH10g0432 HCH-Chr10:3449487 HCH6g0888 HCH-Chr6:43684662 2.50E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80982 PF00069 Pkinase 7.30E-31 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0432 K08286 - csv:101202905 758.444