Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0445 ATGGCTCTCATTCCTCTCCTCCTGTTTCTCCCATTTCTCTCCCTCGGAATCCACTCAGAACCAACGCAAGACAAACAATCCCTCCTCTCCTTCCTCTCTCAAACCCCACACGCGAATCGTCTCCAATGGAACTCCTCAATCTCAGTCTGCAACTGGGTCGGCGTCCAATGCGATCCCACCAATTCCTCCGTCCACTCCCTCCGTCTCCCCGGCGTCGGCCTCGTCGGTCCCATTCCCTCCGACACAATTTCCAAACTCACCCAGCTCCGCGTCTTGAGCCTCCGTTCCAATCGCCTCTCCGGTCCCATCCCCCCCGATTTCTCCAACTTAACCATGCTTCGTAATCTCTATTTGCAAGACAATGCTTTTAACGGCGACTTCCCTCTTCCCCTCACTCACTTAAACCGTCTGACGCGTCTTGATTTGTCTTCCAACGACTTTTCGGGTTCGATTCCGCCTTCGGTCAGTAATCTGACTCGTTTAACTGGTTTGTTTTTGCAAAACAATGCCTTTTCCGGCTCCATCCCGGATTTAAAACTCGTTAATTTAACTAACTTCAATGTCTCTTTCAACAAACTCAACGGCTCCATCCCTGATTCCTTACTGAAATTCCCTCCCTCTTCGTTTTCCGGTAACTTAAACCTCTGCGGCGGTCCGTTACAGTCTTGTAACGACAACCAAACGAATCCCGTTACTCAGAATTCCAAATCCAAATCCAAACGTCTCTCTACACTCGCCATTGTCGGAATCATCGTGGGGTCTGTTCTTTTCATCTTCATCATCCTCCTATTGATCATTTTATGTGTCCGTAAACGACAACGACAGCAAAAACAGACGAATGCTCCGAAACCGGGTGTGGTTCCGAGATCAGTGGAAGCAGCGGGAGCGGGAGCGGGAGCTGGAGCGGGGGCGTCGTCGTCGAAAGAGGAGGATGTAACGGGGGGATCGGTGGAGGCGGGGGAGAGGAATAAGCTGGTGTTTTTCGAAGGTGGGGTTTATAATTTTGACTTGGAGGATTTGTTGAGAGCTTCGGCGGAGGTATTGGGGAAGGGAAGCGTGGGGACGTCGTATAAGGCGGTGCTGGAAGAAGGAACGACGGTGGTGGTGAAAAGATTGAAAGACGTGGTGGTGATGAAGAAAGAATTCGAAATGGTAATGGAAGGATTGGGGAAGATCAAACATCACAATGTGGTTCCAGTCAGAGCTTTTTATTTTTCTAAAGATGAGAAATTGCTCGTCTCTGATTATATCCCCACCGGAAGCTTGTCGGCCAGTCTCCACGGAAGTAGAGGCTCAGGCCGTACCCCACTGGATTGGGATTCCAGGATGAGAATAGCACTGAGTGCTGCTAGGGGCCTCGCCCACCTACACATTTCCAGCAAGGTTGTCCATGGCAACATCAAGTCATCGAACATCTTGCTACGACCTGATCACGATGCTTGTATTTCCGACTACGGTCTCAACCCGCTTTTTGGCACCTCGACACCTCCCAACCGTGTCGCGGGTTATCGTGCTCCGGAGGTGGTCGAGACTCGGAAAGTTACATTCAAGTCTGATGTTTACAGCTTTGGTGTTTTGCTTTTGGAGCTCTTGACTGGGAAGGCACCTAATCAACAGTCTCTCGGAGAGGAAGGAATTGACCTCCCCCGATGGGTCCAGTCGGTCGTTCGAGAAGAATGGACAGCTGAGGTGTTCGATACCGAGCTGATGCGGTACCACAATATAGAAGAAGAGATGGTTCAATTGCTACAAATTGCAATGTCATGTGTGTCCACAGTCCCTGATCAAAGGCCGCCGATGCAAGACGTAGTCCGTATGATCGAAGATATGAATAGAAGCGAGACCGACGACGGTTTACGTCAATCTTCAGATGATCCTTCGAAAGGTTCCGACGTTAACACGCCGCCAGCAGAGTCGAGAACCCCACCAAGAGTCATCACACCATAG 1947 50.44 MALIPLLLFLPFLSLGIHSEPTQDKQSLLSFLSQTPHANRLQWNSSISVCNWVGVQCDPTNSSVHSLRLPGVGLVGPIPSDTISKLTQLRVLSLRSNRLSGPIPPDFSNLTMLRNLYLQDNAFNGDFPLPLTHLNRLTRLDLSSNDFSGSIPPSVSNLTRLTGLFLQNNAFSGSIPDLKLVNLTNFNVSFNKLNGSIPDSLLKFPPSSFSGNLNLCGGPLQSCNDNQTNPVTQNSKSKSKRLSTLAIVGIIVGSVLFIFIILLLIILCVRKRQRQQKQTNAPKPGVVPRSVEAAGAGAGAGAGASSSKEEDVTGGSVEAGERNKLVFFEGGVYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVMKKEFEMVMEGLGKIKHHNVVPVRAFYFSKDEKLLVSDYIPTGSLSASLHGSRGSGRTPLDWDSRMRIALSAARGLAHLHISSKVVHGNIKSSNILLRPDHDACISDYGLNPLFGTSTPPNRVAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKAPNQQSLGEEGIDLPRWVQSVVREEWTAEVFDTELMRYHNIEEEMVQLLQIAMSCVSTVPDQRPPMQDVVRMIEDMNRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVITP 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3554421 3558276 - evm.model.ptg000016l.715 HCH10g0445 552518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0445 648 Gene3D Phosphorylase Kinase; domain 1 310 416 - -
HCH10g0445 648 SUPERFAMILY Protein kinase-like (PK-like) 346 607 IPR011009 -
HCH10g0445 648 FunFam pollen receptor-like kinase 1 311 416 - -
HCH10g0445 648 Gene3D Ribonuclease Inhibitor 179 227 IPR032675 -
HCH10g0445 648 Pfam Protein kinase domain 346 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0445 648 PANTHER OS05G0588300 PROTEIN 6 617 IPR050994 -
HCH10g0445 648 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 417 621 - -
HCH10g0445 648 Pfam Leucine rich repeat 78 122 IPR001611 GO:0005515(InterPro)
HCH10g0445 648 MobiDBLite consensus disorder prediction 297 316 - -
HCH10g0445 648 Gene3D Transferase(Phosphotransferase) domain 1 417 630 - -
HCH10g0445 648 SUPERFAMILY L domain-like 30 209 - -
HCH10g0445 648 Pfam Leucine Rich Repeat 182 202 IPR001611 GO:0005515(InterPro)
HCH10g0445 648 Pfam Leucine Rich Repeat 136 158 IPR001611 GO:0005515(InterPro)
HCH10g0445 648 SMART serkin_6 342 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0445 648 MobiDBLite consensus disorder prediction 609 648 - -
HCH10g0445 648 Pfam Leucine rich repeat N-terminal domain 22 58 IPR013210 -
HCH10g0445 648 Gene3D Ribonuclease Inhibitor 22 178 IPR032675 -
HCH10g0445 648 MobiDBLite consensus disorder prediction 609 624 - -
HCH10g0445 648 ProSiteProfiles Protein kinase domain profile. 342 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0445 648 FunFam Probable inactive receptor kinase RLK902 21 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0445 HCH-Chr10:3554421 HCH2g0970 HCH-Chr2:53026899 3.50E-129 dispersed
HCH10g0445 HCH-Chr10:3554421 HCH8g0788 HCH-Chr8:44481990 2.90E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80983 PF00069 Pkinase 1.60E-34 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0445 - - - 0.0