Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0457 | ATGAAGAAGCAGCAAAAACAAAAACCCCATTTCAAGTTTGCTTTTTTGCTTCACATTCTCACTCTTGTTTCTCTCTCTTCTTCATTTCCAATCCATGGCGGCAGCAGCTCTCTCTCTGATGCAGAAGCTCACTATATCAAACAAAGACAGCTCCTTTATTACCGTGACGAATTCGGCGATAGAGGCGAAAAGGTGACCGTTGATCCGTCTCTCGTTTTTCAAAACCCCAGACTCAAAAATGCTTATATTGCATTGCAAGCTTGGAAACAAGCTATTCTATCTGACCCTCGGAATCTTACCCTCAATTGGGTTGGATCTGATGTTTGTCACTATAAAGGTGTTTTCTGTGCTCCGGCGCCGGATAATTCTTCGCTCCTCACCGTCGCTGGTATCGACTTGAATCACGGTGACATTGCCGGATACTTGCCTGAAGAGCTCGGTCTTTTGACGGATCTTGCATTGTTCCATATCAATTCAAATCGCTTCTGTGGGACTGTCCCGCATAAGTTTAAGAATTTGAAGCTTTTGTTTGAGTTGGATCTGAGTAACAACCGCTTCGCCGGGAAGTTCCCACGAGTCGTTCTCCGGCTCCCAGAGCTTAAGTTCTTGGATCTGAGATTCAATGAGTTCGAAGGGACGGTCCCGGAGGAGTTGTTTGATAAAGATTTGGATGCCATTTTCATTAACCATAATCGGTTTCATTTCGATTTGCCGGATAATTTTGGTAACTCTCCGGTTTCGGTGATTGTTCTGGCGAATAATAAGTTTCATGGGTGTGTTCCGGGAAGCATTGGGAACATGACGAGGTTGAATGAGATACTTTTGATGAATAATGGGTTCCGGTCGTGTTTGCCGCCGGAGATTGGGTTTTTGAAAAACTTGACGGTGTTTGATGTGAGTGGGAATGAGTTTTTGGGACCGTTGCCGGAGACGATAGGAGGAATGGTGAGCTTGGAGCAGCTGAATGTGGCTCATAATTTCTTGTCCGGGAAGATTCCGGAGAGCATTTGTAAATTGCCGAATCTTCAGAACTTTACTTACTCTTATAACTTCTTTACTGGAGAAGCGCCGGCGTGTTTGTCGTTGCCGGATTTTGATGATCGGAGGAATTGTTTGCCGGCACGGCCGTTGCAAAGGTCTGATAGACAATGTAAGTCGTTTTTGTCTAAGCCTGTGGATTGTTCTTCTTTTGGATGTCCTTCTTTTGTTCCTAAACCGCCGGTTGTGGTCCCCTCTCCGCCGCCTACGGTGGTTCCCTCTCCGCCACCTGTGGTGGTTTCTTCTCCCCCGCCACCGGTTTCATCTTCTCACCCGATTTATAGACCCCGTCCTCCACCTCCTCCTTCACCGTCTCCTCCACCACCACCGGTTTACTCTCCACCTCCACCTCCGCCATCACCTCCTCCACCACCACCGGTATATTCTCCACCCCCGCCACCACCACCAGTTTACTCTCCACCCCCACCTCCACCGTCTCCCCCACCACCTTCACCTCCACCGCCGCCTCCACCAGTCTACTCTCCACCACCACCACCTCCGCCATCACCGCCACCTCCATCTCCTCCGCCGCCACCACCCCCAATTTACTCACCGCCCCCGCCACCTCCATCACCTCCCCCTCCATCTCCATCCCCACCGCCACCGGCTCCCGTATATTGCGTTCGACCATCACCGCCACCACCACCACCAAATTCTCCCCCACCACCCCCTCCCTTATACTCTCCACCACCACCCGTTTACTACTACAACTCACCGCCCCCGCCAAACTCTCCGCCACCGCCACCACTGTACTCTCCACCGCCACCTCCAAATTCACCACCACCACCACCCCATTCTCCTCCACCCCCAATCTATCCTTACCTATCTCCACCACCTCCCCCACCTGTCCATTCTCCTCCTCCACCCGTCTACTCACCGCCGCCACCCCCACCATGTATAGAACCTCCCCCACCACCACCGCCACCATGTATAGAATATCCCGAACCACCACCTCCGCCATCACCATCACCTCCCCCACCAATTCAATACCTTCCCCCACCATCACCATCACCTCCTCCACCCCCACCAGTCTACCATTCACCCCCACCAGTTTACCATTCACCTCCCCCACCTTCACCATCACCACCACCAATCCAATACCATTCTCCACCACCGCCATCTCCGGCATCGCCACCTCCAACACCCGTTTACGAAGGGCCATTGCCACCAATCTATGGAGTTTCTTACGCCTCCCCTCCACCACCACCCTACTATTGA | 2256 | 52.17 | MKKQQKQKPHFKFAFLLHILTLVSLSSSFPIHGGSSSLSDAEAHYIKQRQLLYYRDEFGDRGEKVTVDPSLVFQNPRLKNAYIALQAWKQAILSDPRNLTLNWVGSDVCHYKGVFCAPAPDNSSLLTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFKNLKLLFELDLSNNRFAGKFPRVVLRLPELKFLDLRFNEFEGTVPEELFDKDLDAIFINHNRFHFDLPDNFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEILLMNNGFRSCLPPEIGFLKNLTVFDVSGNEFLGPLPETIGGMVSLEQLNVAHNFLSGKIPESICKLPNLQNFTYSYNFFTGEAPACLSLPDFDDRRNCLPARPLQRSDRQCKSFLSKPVDCSSFGCPSFVPKPPVVVPSPPPTVVPSPPPVVVSSPPPPVSSSHPIYRPRPPPPPSPSPPPPPVYSPPPPPPSPPPPPPVYSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPPSPPPPSPPPPPPPIYSPPPPPPSPPPPSPSPPPPAPVYCVRPSPPPPPPNSPPPPPPLYSPPPPVYYYNSPPPPNSPPPPPLYSPPPPPNSPPPPPHSPPPPIYPYLSPPPPPPVHSPPPPVYSPPPPPPCIEPPPPPPPPCIEYPEPPPPPSPSPPPPIQYLPPPSPSPPPPPPVYHSPPPVYHSPPPPSPSPPPIQYHSPPPPSPASPPPTPVYEGPLPPIYGVSYASPPPPPYY | 751 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3725504 | 3727759 | - | evm.model.ptg000016l.703 | HCH10g0457 | 552530 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0457 | 751 | FunFam | Leucine-rich repeat extensin-like protein 1 | 82 | 243 | - | - | |
HCH10g0457 | 751 | Pfam | Leucine rich repeat | 153 | 209 | IPR001611 | GO:0005515(InterPro) | |
HCH10g0457 | 751 | FunFam | Leucine-rich repeat extensin-like protein 5 | 244 | 383 | - | - | |
HCH10g0457 | 751 | Gene3D | Ribonuclease Inhibitor | 82 | 242 | IPR032675 | - | |
HCH10g0457 | 751 | MobiDBLite | consensus disorder prediction | 587 | 614 | - | - | |
HCH10g0457 | 751 | PRINTS | Proline rich extensin signature | 460 | 481 | - | - | |
HCH10g0457 | 751 | PRINTS | Proline rich extensin signature | 422 | 438 | - | - | |
HCH10g0457 | 751 | PRINTS | Proline rich extensin signature | 443 | 455 | - | - | |
HCH10g0457 | 751 | PRINTS | Proline rich extensin signature | 405 | 417 | - | - | |
HCH10g0457 | 751 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 20 | 533 | IPR051582 | - | |
HCH10g0457 | 751 | Pfam | Leucine rich repeat N-terminal domain | 84 | 116 | IPR013210 | - | |
HCH10g0457 | 751 | Gene3D | Ribonuclease Inhibitor | 243 | 371 | IPR032675 | - | |
HCH10g0457 | 751 | MobiDBLite | consensus disorder prediction | 656 | 751 | - | - | |
HCH10g0457 | 751 | Pfam | Leucine Rich Repeat | 293 | 315 | IPR001611 | GO:0005515(InterPro) | |
HCH10g0457 | 751 | Pfam | Leucine Rich Repeat | 317 | 339 | IPR001611 | GO:0005515(InterPro) | |
HCH10g0457 | 751 | SUPERFAMILY | L domain-like | 82 | 362 | - | - | |
HCH10g0457 | 751 | MobiDBLite | consensus disorder prediction | 417 | 547 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0457 | HCH-Chr10:3725504 | HCH12g0330 | HCH-Chr12:1904102 | 3.90E-55 | dispersed | |
HCH10g0457 | HCH-Chr10:3725504 | HCH8g0769 | HCH-Chr8:44314220 | 2.20E-74 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0457 | - | - | - | 0.0 |