Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0457 ATGAAGAAGCAGCAAAAACAAAAACCCCATTTCAAGTTTGCTTTTTTGCTTCACATTCTCACTCTTGTTTCTCTCTCTTCTTCATTTCCAATCCATGGCGGCAGCAGCTCTCTCTCTGATGCAGAAGCTCACTATATCAAACAAAGACAGCTCCTTTATTACCGTGACGAATTCGGCGATAGAGGCGAAAAGGTGACCGTTGATCCGTCTCTCGTTTTTCAAAACCCCAGACTCAAAAATGCTTATATTGCATTGCAAGCTTGGAAACAAGCTATTCTATCTGACCCTCGGAATCTTACCCTCAATTGGGTTGGATCTGATGTTTGTCACTATAAAGGTGTTTTCTGTGCTCCGGCGCCGGATAATTCTTCGCTCCTCACCGTCGCTGGTATCGACTTGAATCACGGTGACATTGCCGGATACTTGCCTGAAGAGCTCGGTCTTTTGACGGATCTTGCATTGTTCCATATCAATTCAAATCGCTTCTGTGGGACTGTCCCGCATAAGTTTAAGAATTTGAAGCTTTTGTTTGAGTTGGATCTGAGTAACAACCGCTTCGCCGGGAAGTTCCCACGAGTCGTTCTCCGGCTCCCAGAGCTTAAGTTCTTGGATCTGAGATTCAATGAGTTCGAAGGGACGGTCCCGGAGGAGTTGTTTGATAAAGATTTGGATGCCATTTTCATTAACCATAATCGGTTTCATTTCGATTTGCCGGATAATTTTGGTAACTCTCCGGTTTCGGTGATTGTTCTGGCGAATAATAAGTTTCATGGGTGTGTTCCGGGAAGCATTGGGAACATGACGAGGTTGAATGAGATACTTTTGATGAATAATGGGTTCCGGTCGTGTTTGCCGCCGGAGATTGGGTTTTTGAAAAACTTGACGGTGTTTGATGTGAGTGGGAATGAGTTTTTGGGACCGTTGCCGGAGACGATAGGAGGAATGGTGAGCTTGGAGCAGCTGAATGTGGCTCATAATTTCTTGTCCGGGAAGATTCCGGAGAGCATTTGTAAATTGCCGAATCTTCAGAACTTTACTTACTCTTATAACTTCTTTACTGGAGAAGCGCCGGCGTGTTTGTCGTTGCCGGATTTTGATGATCGGAGGAATTGTTTGCCGGCACGGCCGTTGCAAAGGTCTGATAGACAATGTAAGTCGTTTTTGTCTAAGCCTGTGGATTGTTCTTCTTTTGGATGTCCTTCTTTTGTTCCTAAACCGCCGGTTGTGGTCCCCTCTCCGCCGCCTACGGTGGTTCCCTCTCCGCCACCTGTGGTGGTTTCTTCTCCCCCGCCACCGGTTTCATCTTCTCACCCGATTTATAGACCCCGTCCTCCACCTCCTCCTTCACCGTCTCCTCCACCACCACCGGTTTACTCTCCACCTCCACCTCCGCCATCACCTCCTCCACCACCACCGGTATATTCTCCACCCCCGCCACCACCACCAGTTTACTCTCCACCCCCACCTCCACCGTCTCCCCCACCACCTTCACCTCCACCGCCGCCTCCACCAGTCTACTCTCCACCACCACCACCTCCGCCATCACCGCCACCTCCATCTCCTCCGCCGCCACCACCCCCAATTTACTCACCGCCCCCGCCACCTCCATCACCTCCCCCTCCATCTCCATCCCCACCGCCACCGGCTCCCGTATATTGCGTTCGACCATCACCGCCACCACCACCACCAAATTCTCCCCCACCACCCCCTCCCTTATACTCTCCACCACCACCCGTTTACTACTACAACTCACCGCCCCCGCCAAACTCTCCGCCACCGCCACCACTGTACTCTCCACCGCCACCTCCAAATTCACCACCACCACCACCCCATTCTCCTCCACCCCCAATCTATCCTTACCTATCTCCACCACCTCCCCCACCTGTCCATTCTCCTCCTCCACCCGTCTACTCACCGCCGCCACCCCCACCATGTATAGAACCTCCCCCACCACCACCGCCACCATGTATAGAATATCCCGAACCACCACCTCCGCCATCACCATCACCTCCCCCACCAATTCAATACCTTCCCCCACCATCACCATCACCTCCTCCACCCCCACCAGTCTACCATTCACCCCCACCAGTTTACCATTCACCTCCCCCACCTTCACCATCACCACCACCAATCCAATACCATTCTCCACCACCGCCATCTCCGGCATCGCCACCTCCAACACCCGTTTACGAAGGGCCATTGCCACCAATCTATGGAGTTTCTTACGCCTCCCCTCCACCACCACCCTACTATTGA 2256 52.17 MKKQQKQKPHFKFAFLLHILTLVSLSSSFPIHGGSSSLSDAEAHYIKQRQLLYYRDEFGDRGEKVTVDPSLVFQNPRLKNAYIALQAWKQAILSDPRNLTLNWVGSDVCHYKGVFCAPAPDNSSLLTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFKNLKLLFELDLSNNRFAGKFPRVVLRLPELKFLDLRFNEFEGTVPEELFDKDLDAIFINHNRFHFDLPDNFGNSPVSVIVLANNKFHGCVPGSIGNMTRLNEILLMNNGFRSCLPPEIGFLKNLTVFDVSGNEFLGPLPETIGGMVSLEQLNVAHNFLSGKIPESICKLPNLQNFTYSYNFFTGEAPACLSLPDFDDRRNCLPARPLQRSDRQCKSFLSKPVDCSSFGCPSFVPKPPVVVPSPPPTVVPSPPPVVVSSPPPPVSSSHPIYRPRPPPPPSPSPPPPPVYSPPPPPPSPPPPPPVYSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPPSPPPPSPPPPPPPIYSPPPPPPSPPPPSPSPPPPAPVYCVRPSPPPPPPNSPPPPPPLYSPPPPVYYYNSPPPPNSPPPPPLYSPPPPPNSPPPPPHSPPPPIYPYLSPPPPPPVHSPPPPVYSPPPPPPCIEPPPPPPPPCIEYPEPPPPPSPSPPPPIQYLPPPSPSPPPPPPVYHSPPPVYHSPPPPSPSPPPIQYHSPPPPSPASPPPTPVYEGPLPPIYGVSYASPPPPPYY 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3725504 3727759 - evm.model.ptg000016l.703 HCH10g0457 552530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0457 751 FunFam Leucine-rich repeat extensin-like protein 1 82 243 - -
HCH10g0457 751 Pfam Leucine rich repeat 153 209 IPR001611 GO:0005515(InterPro)
HCH10g0457 751 FunFam Leucine-rich repeat extensin-like protein 5 244 383 - -
HCH10g0457 751 Gene3D Ribonuclease Inhibitor 82 242 IPR032675 -
HCH10g0457 751 MobiDBLite consensus disorder prediction 587 614 - -
HCH10g0457 751 PRINTS Proline rich extensin signature 460 481 - -
HCH10g0457 751 PRINTS Proline rich extensin signature 422 438 - -
HCH10g0457 751 PRINTS Proline rich extensin signature 443 455 - -
HCH10g0457 751 PRINTS Proline rich extensin signature 405 417 - -
HCH10g0457 751 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 533 IPR051582 -
HCH10g0457 751 Pfam Leucine rich repeat N-terminal domain 84 116 IPR013210 -
HCH10g0457 751 Gene3D Ribonuclease Inhibitor 243 371 IPR032675 -
HCH10g0457 751 MobiDBLite consensus disorder prediction 656 751 - -
HCH10g0457 751 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
HCH10g0457 751 Pfam Leucine Rich Repeat 317 339 IPR001611 GO:0005515(InterPro)
HCH10g0457 751 SUPERFAMILY L domain-like 82 362 - -
HCH10g0457 751 MobiDBLite consensus disorder prediction 417 547 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0457 HCH-Chr10:3725504 HCH12g0330 HCH-Chr12:1904102 3.90E-55 dispersed
HCH10g0457 HCH-Chr10:3725504 HCH8g0769 HCH-Chr8:44314220 2.20E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0457 - - - 0.0