Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0465 ATGTCAACCCCTACTCCGGCGCCGACGTCCCCGCCGTCGACCAATTCCACATCTCCCCCACCGCCAACTCCCACTACTCCACCTCCGTCGCAGCCTCCGCCTTCCTCCGCCCCTCCACCGGCTACCCCTTCTCCGCCTCCACCTTCTGCAACACCCCCAGCTACCCCATCTCAGCCCCCGCCGTCCTCCGCCCCACCTCCGTCTACACCGTCCTCACCACCTCCGCCGGCAACTCCCGAGCCTACACCACCCACTACCCCTCCCTCTCCTCCGACTGCCCGACCGACGCCGGTGAGTTCTCCGCCACCGCCGGCGAGTATTACCCCGCCGTCTCCTCCGGTGGTTCGGAGTCCACCCTCTCCTCCTTCCCGCACTCCCTCCAATCCGTCGAGGAGTCCTCCGCCTCCGACACCGTCGACATCATCGTCGTCGTCATCTTCCATTTCGACCGGGCTTGTGGTAGGAATTGCCATTGGTGGGGTGGTAATTCTTTTGCTTCTTAGTTTGTTATGTGTTTGTTGTACAAAGAAGAGAAGGAGGAGACGTGATGAAGAGGATTATTATGCGCCACCTCCTCCACATGGACCAAAAGTTGACCCTTACGGTGGACAGCCGCAACAATGGCAGCAAAATGCTCCTCTGCCGCCAGCTCCTATTGTAGGAATGATGCCGAAGCCGTCTCCCCCTCCAGCAGTTGCATCTCGACCTCCTCACTCTCCTGTTCATCCCCCACCTCAGCCAGGTCCTCTTTATATGAGTAGCAGTGGAGGGTCGGGCTCTATGTATTCTGGTTCTGAAAATCCACTCCCTCCACCACCACCGCCTGCTATGGCTTTTGGTTTCTCGAAGAGTACCTTTACTTATGAGGAATTAGCAATGGCAACGGACGGCTTCTCAGATGCTAATCTCCTTGGACAAGGTGGATTTGGATATGTGCATAGAGGGGTTCTTCCTAATGGAAAGGAAGTAGCAGTCAAACAGTTAAAAGCTGGAAGCGGGCAGGGTGAACGAGAATTTCAAGCTGAAGTTGAGATTATTAGCCGAGTACATCATAAACATCTTGTTTCATTAGTTGGATATTGCATTACTGGCTCCCAAAGATTGCTTGTTTATGAGTTTGTACCCAACAATACTTTGGAGTTTCATTTACATGGGAAAGGACGGCCTACCATGGATTGGCATACGAGACTTAAAATTGCTTTAGGATCAGCTAAAGGACTCGCGTATCTTCATGAAGATTGTCATCCGAAAATCATTCATCGCGACATCAAAGCGGCTAACATACTGTTGGATTTTAAGTTTGAGTCAAAGGTTGCCGATTTTGGACTTGCAAAGCTTTCTTCTGATGTCAACACCCATATATCGACCCGGGTGATGGGTACTTTCGGGTATCTTGCACCAGAGTATGCTTCAAGTGGTAAACTCACTGATAAATCAGACGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTCATTACCGGTCGTAGACCAGTCGATACAAGTAATACCTTCATGGAGGACAGTCTGGTGGACTGGGCGAGGCCTTTACTAAATCGAGCATTAGAAGATGGGAACTTTGATGGTTTGGTTGATCCAAGGATGCAAAATAACTATAACCACAACGAGATGGCTCGCATGGTAGCCTGCGCTGCTGCTAGTGTCCGCCATTCCGCAAGGCGCCGGCCCCGAATGAGCCAGGTAGTCCGAGCGCTTGAAGGAGACGCATCGCTATCGGATCTAAACGAAGGAATCAAACCCGGGCATAGCACGGTGTACAGTTCTCACGAGAGCTCAGATTACGACACAAACCAGTACAATGAGGACTTGAGAAAGTTCAGGAAGGTGGCACTAGGAAGCACAGACTATGGTGCAAGTAGTGAATACAGTGGACCAACCAGTGAGTATGGATTATATCCATCTGGTTCAAGCAGTGAAGGCCAAGCCACACGAGAAATGGAAATGAAAACACTAAAAAAAGACAGTCAAGGTTTCAGTGGAAGTTCTTGA 2007 51.07 MSTPTPAPTSPPSTNSTSPPPPTPTTPPPSQPPPSSAPPPATPSPPPPSATPPATPSQPPPSSAPPPSTPSSPPPPATPEPTPPTTPPSPPTARPTPVSSPPPPASITPPSPPVVRSPPSPPSRTPSNPSRSPPPPTPSTSSSSSSSISTGLVVGIAIGGVVILLLLSLLCVCCTKKRRRRRDEEDYYAPPPPHGPKVDPYGGQPQQWQQNAPLPPAPIVGMMPKPSPPPAVASRPPHSPVHPPPQPGPLYMSSSGGSGSMYSGSENPLPPPPPPAMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWHTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFESKVADFGLAKLSSDVNTHISTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLEFITGRRPVDTSNTFMEDSLVDWARPLLNRALEDGNFDGLVDPRMQNNYNHNEMARMVACAAASVRHSARRRPRMSQVVRALEGDASLSDLNEGIKPGHSTVYSSHESSDYDTNQYNEDLRKFRKVALGSTDYGASSEYSGPTSEYGLYPSGSSSEGQATREMEMKTLKKDSQGFSGSS 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3807132 3810599 + evm.model.ptg000016l.695 HCH10g0465 552538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0465 668 SMART serkin_6 298 534 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0465 668 CDD STKc_IRAK 304 573 - -
HCH10g0465 668 PRINTS Proline rich extensin signature 21 38 - -
HCH10g0465 668 PRINTS Proline rich extensin signature 4 20 - -
HCH10g0465 668 PRINTS Proline rich extensin signature 49 74 - -
HCH10g0465 668 MobiDBLite consensus disorder prediction 1 140 - -
HCH10g0465 668 MobiDBLite consensus disorder prediction 622 650 - -
HCH10g0465 668 Pfam Protein tyrosine and serine/threonine kinase 303 569 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0465 668 MobiDBLite consensus disorder prediction 179 273 - -
HCH10g0465 668 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
HCH10g0465 668 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 121 615 IPR047117 -
HCH10g0465 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0465 668 Gene3D Transferase(Phosphotransferase) domain 1 374 583 - -
HCH10g0465 668 MobiDBLite consensus disorder prediction 1 147 - -
HCH10g0465 668 SUPERFAMILY Protein kinase-like (PK-like) 274 571 IPR011009 -
HCH10g0465 668 ProSiteProfiles Protein kinase domain profile. 298 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0465 668 MobiDBLite consensus disorder prediction 578 602 - -
HCH10g0465 668 Gene3D Phosphorylase Kinase; domain 1 275 373 - -
HCH10g0465 668 FunFam Proline-rich receptor-like protein kinase PERK1 374 582 - -
HCH10g0465 668 FunFam proline-rich receptor-like protein kinase PERK1 276 373 - -
HCH10g0465 668 MobiDBLite consensus disorder prediction 251 265 - -
HCH10g0465 668 MobiDBLite consensus disorder prediction 217 250 - -
HCH10g0465 668 MobiDBLite consensus disorder prediction 621 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0465 HCH-Chr10:3807132 HCH1g1033 HCH-Chr1:58269519 1.40E-128 dispersed
HCH8g1040 HCH-Chr8:46357201 HCH10g0465 HCH-Chr10:3807132 4.30E-63 dispersed
HCH2g0440 HCH-Chr2:47723369 HCH10g0465 HCH-Chr10:3807132 3.00E-157 transposed
HCH10g0465 HCH-Chr10:3807132 HCH8g0750 HCH-Chr8:44129632 1.70E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80984 PF07714 PK_Tyr_Ser-Thr 3.20E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0465 - - - 0.0