Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0471 ATGGGGGAAGGAGATATAGCTGATGCTGTGTCACAGAAAAAGGATCAATCGGACGGTGCAGCTCCGAGTAATTCTTCGTCGTCGGAGATTCCGTCGAAGAAGCTCGCTAGGCAGCTGGATTTCACGGCCTTTGGAGGCGCGTCTGCTTCAGCTTCAGTATCTGCGTCTCATTCGAATTCGCATTCGCATTCGCCGTCGCCGGCTTCGGTAGTTGCTCAGAGTCCGCCGAAGATACAGCCGCAGACGGTGGCAGCAGCAGTGGCACCTCATTTGTCAGTGAGAGCTGTGAAACCTGAGTCTCCAATGTCAAGATCAAGACCTGCTGTTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAATTGTAAACATTCCCGTTGTCTAAAATTGTATTGTGAATGTTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGAAGCTGCTAGAAGGGAAGCAGTTGAAGCTACATTAGAGCGTAATCCTAATGCCTTTCGACCAAAAATTGCAAGCAGTCCTCATGGGATCCGGGATAGTAGGGAGGAGGCTGGGGAGTTGCTGATACTAGGTAAGCATAACAAAGGATGCCACTGCAAAAAATCAGGTTGCCTGAAAAAATACTGTGAGTGCTTCCAGGCCAACATTCTCTGTTCTGACAATTGTAAGTGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAGTAACATAGCATTCATTCAGCAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCAGGCTATGCTTCACCTCCAGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTCGGATCAACCGCTAAGGATCTATCCATTCAAAGGCCAGTACAACTTCAACAGGCAAATCATATCAGAGCCTCTGCTCCTTCCCTACCAGCTTTCCCGATTGCAGGTGTTGGAAACCCATCACTGTTGGGCCCTTCAAAGTTTACGTATAGGTCTTTAATGGCAGACATAATTCAGCCACAAGATTTGAAGGATCTTTGCTCGGTCTTGGTTGTGCTATCAAGTGAAGCTGCCAAGACAATTGAAGACCAAAGAAATGCCACAGAAAAGCTAGCAGACTGTCAGATGGAAACTTCTGTTGCTTCATCCACTCTAGATAGGTTGCAGAACAAAGATGCATCTGAAGAGAAAGCTGCAGCTGATGATCGTTCGAGTGCAAATCAGGCTGATAAAACCACCACTGATGATTCTAATTCAGATGGCGCAGATGTGCCAAAGGGTGTGCCCATGTCTCCTGGAACTTTAGCTTTGATGTGTGATGAGCAAGATACGATGTTGATGGCTGCTGCATCCCCCAGTCGGTTAATGGGCCCTGGATGCAGCACCTCTTCACAACTGCCTCACAGACAAGACATGTCAGGGGTCTATGCCGAGCAGGAAAGGATTGTCCTTACAAAGTTTCGGGATTGTCTCAATAGACTCATTACTTTGGGAGAGATAAAAGAGACACAATGTTCATCTTTTGCCAGAAGTGAAGTAGGTAATCAAGAAAGAGAATTCAACAATGGCACCTCAAATCCCAGAACTGAAACTCAAACTCATTTTGGTCCATTCAACAATAAAGTTGCAAAATCGTCTAATCCACCCACGGTGAAGTCGTCACAAACGGTAACTGCAGCTGTCATGACCCTTAGTAATGATCAGCGACAGAAAGTTTTGCCCCTATCTTGA 1773 45.4 MGEGDIADAVSQKKDQSDGAAPSNSSSSEIPSKKLARQLDFTAFGGASASASVSASHSNSHSHSPSPASVVAQSPPKIQPQTVAAAVAPHLSVRAVKPESPMSRSRPAVVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGIRDSREEAGELLILGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGSNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGSTAKDLSIQRPVQLQQANHIRASAPSLPAFPIAGVGNPSLLGPSKFTYRSLMADIIQPQDLKDLCSVLVVLSSEAAKTIEDQRNATEKLADCQMETSVASSTLDRLQNKDASEEKAAADDRSSANQADKTTTDDSNSDGADVPKGVPMSPGTLALMCDEQDTMLMAAASPSRLMGPGCSTSSQLPHRQDMSGVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSFARSEVGNQEREFNNGTSNPRTETQTHFGPFNNKVAKSSNPPTVKSSQTVTAAVMTLSNDQRQKVLPLS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3853563 3857934 - evm.model.ptg000016l.689 HCH10g0471 552544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0471 590 MobiDBLite consensus disorder prediction 403 418 - -
HCH10g0471 590 SMART CXC_2 203 244 IPR033467 -
HCH10g0471 590 SMART CXC_2 118 158 IPR033467 -
HCH10g0471 590 MobiDBLite consensus disorder prediction 16 33 - -
HCH10g0471 590 PANTHER TESMIN/TSO1-RELATED 10 519 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
HCH10g0471 590 MobiDBLite consensus disorder prediction 396 447 - -
HCH10g0471 590 MobiDBLite consensus disorder prediction 419 434 - -
HCH10g0471 590 Coils Coil 153 173 - -
HCH10g0471 590 MobiDBLite consensus disorder prediction 532 566 - -
HCH10g0471 590 MobiDBLite consensus disorder prediction 1 34 - -
HCH10g0471 590 ProSiteProfiles CRC domain profile. 119 243 IPR005172 -
HCH10g0471 590 MobiDBLite consensus disorder prediction 52 77 - -
HCH10g0471 590 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 206 240 IPR005172 -
HCH10g0471 590 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 120 155 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0471 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0471 HCH-Chr10:3853563 HCH6g1571 HCH-Chr6:48992266 2.30E-31 dispersed
HCH10g0471 HCH-Chr10:3853563 HCH8g0739 HCH-Chr8:44072214 2.90E-167 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0471 . 1 520 CPP Transcription Factor Family AT2G20110 54.1 1.6e-138 490.0
HCH8g0739 . 36 520 CPP Transcription Factor Family AT2G20110 51.8 2.7e-122 436.0
HCH10g0471 . 93 527 CPP Transcription Factor Family AT4G29000 62.3 3.7e-149 525.4
HCH8g0739 . 4 518 CPP Transcription Factor Family AT4G29000 53.2 8.3e-141 497.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32440 PF03638 TCR 2.90E-12 No_clan HCH TF