Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0471 ATGGGGGAAGGAGATATAGCTGATGCTGTGTCACAGAAAAAGGATCAATCGGACGGTGCAGCTCCGAGTAATTCTTCGTCGTCGGAGATTCCGTCGAAGAAGCTCGCTAGGCAGCTGGATTTCACGGCCTTTGGAGGCGCGTCTGCTTCAGCTTCAGTATCTGCGTCTCATTCGAATTCGCATTCGCATTCGCCGTCGCCGGCTTCGGTAGTTGCTCAGAGTCCGCCGAAGATACAGCCGCAGACGGTGGCAGCAGCAGTGGCACCTCATTTGTCAGTGAGAGCTGTGAAACCTGAGTCTCCAATGTCAAGATCAAGACCTGCTGTTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAATTGTAAACATTCCCGTTGTCTAAAATTGTATTGTGAATGTTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGAAGCTGCTAGAAGGGAAGCAGTTGAAGCTACATTAGAGCGTAATCCTAATGCCTTTCGACCAAAAATTGCAAGCAGTCCTCATGGGATCCGGGATAGTAGGGAGGAGGCTGGGGAGTTGCTGATACTAGGTAAGCATAACAAAGGATGCCACTGCAAAAAATCAGGTTGCCTGAAAAAATACTGTGAGTGCTTCCAGGCCAACATTCTCTGTTCTGACAATTGTAAGTGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAGTAACATAGCATTCATTCAGCAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCAGGCTATGCTTCACCTCCAGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTCGGATCAACCGCTAAGGATCTATCCATTCAAAGGCCAGTACAACTTCAACAGGCAAATCATATCAGAGCCTCTGCTCCTTCCCTACCAGCTTTCCCGATTGCAGGTGTTGGAAACCCATCACTGTTGGGCCCTTCAAAGTTTACGTATAGGTCTTTAATGGCAGACATAATTCAGCCACAAGATTTGAAGGATCTTTGCTCGGTCTTGGTTGTGCTATCAAGTGAAGCTGCCAAGACAATTGAAGACCAAAGAAATGCCACAGAAAAGCTAGCAGACTGTCAGATGGAAACTTCTGTTGCTTCATCCACTCTAGATAGGTTGCAGAACAAAGATGCATCTGAAGAGAAAGCTGCAGCTGATGATCGTTCGAGTGCAAATCAGGCTGATAAAACCACCACTGATGATTCTAATTCAGATGGCGCAGATGTGCCAAAGGGTGTGCCCATGTCTCCTGGAACTTTAGCTTTGATGTGTGATGAGCAAGATACGATGTTGATGGCTGCTGCATCCCCCAGTCGGTTAATGGGCCCTGGATGCAGCACCTCTTCACAACTGCCTCACAGACAAGACATGTCAGGGGTCTATGCCGAGCAGGAAAGGATTGTCCTTACAAAGTTTCGGGATTGTCTCAATAGACTCATTACTTTGGGAGAGATAAAAGAGACACAATGTTCATCTTTTGCCAGAAGTGAAGTAGGTAATCAAGAAAGAGAATTCAACAATGGCACCTCAAATCCCAGAACTGAAACTCAAACTCATTTTGGTCCATTCAACAATAAAGTTGCAAAATCGTCTAATCCACCCACGGTGAAGTCGTCACAAACGGTAACTGCAGCTGTCATGACCCTTAGTAATGATCAGCGACAGAAAGTTTTGCCCCTATCTTGA 1773 45.4 MGEGDIADAVSQKKDQSDGAAPSNSSSSEIPSKKLARQLDFTAFGGASASASVSASHSNSHSHSPSPASVVAQSPPKIQPQTVAAAVAPHLSVRAVKPESPMSRSRPAVVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGIRDSREEAGELLILGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGSNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGSTAKDLSIQRPVQLQQANHIRASAPSLPAFPIAGVGNPSLLGPSKFTYRSLMADIIQPQDLKDLCSVLVVLSSEAAKTIEDQRNATEKLADCQMETSVASSTLDRLQNKDASEEKAAADDRSSANQADKTTTDDSNSDGADVPKGVPMSPGTLALMCDEQDTMLMAAASPSRLMGPGCSTSSQLPHRQDMSGVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSFARSEVGNQEREFNNGTSNPRTETQTHFGPFNNKVAKSSNPPTVKSSQTVTAAVMTLSNDQRQKVLPLS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3853563 3857934 - evm.model.ptg000016l.689 HCH10g0471 552544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0471 590 MobiDBLite consensus disorder prediction 403 418 - -
HCH10g0471 590 SMART CXC_2 203 244 IPR033467 -
HCH10g0471 590 SMART CXC_2 118 158 IPR033467 -
HCH10g0471 590 MobiDBLite consensus disorder prediction 16 33 - -
HCH10g0471 590 PANTHER TESMIN/TSO1-RELATED 10 519 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
HCH10g0471 590 MobiDBLite consensus disorder prediction 396 447 - -
HCH10g0471 590 MobiDBLite consensus disorder prediction 419 434 - -
HCH10g0471 590 Coils Coil 153 173 - -
HCH10g0471 590 MobiDBLite consensus disorder prediction 532 566 - -
HCH10g0471 590 MobiDBLite consensus disorder prediction 1 34 - -
HCH10g0471 590 ProSiteProfiles CRC domain profile. 119 243 IPR005172 -
HCH10g0471 590 MobiDBLite consensus disorder prediction 52 77 - -
HCH10g0471 590 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 206 240 IPR005172 -
HCH10g0471 590 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 120 155 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0471 HCH-Chr10:3853563 HCH6g1571 HCH-Chr6:48992266 2.30E-31 dispersed
HCH10g0471 HCH-Chr10:3853563 HCH8g0739 HCH-Chr8:44072214 2.90E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32440 PF03638 TCR 2.90E-12 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0471 - - - 0.0