Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0472 ATGGATAACCCACCACCCAAGAGCTGGAGCATCCACACCCGCCCGGAAATAATCCAAAACTACCAAATCCTCGAACGGGTCGGATCCGGATCATACTCCGACGTCTACCGCGCGCGCCGGATCTCCGACGACGTAATCGTAGCCTTGAAGGAAATCCACGATTACCAATCGGCGTTCCGCGAAATCGAAGCGCTCCAAATCTTACAAGGATCGCCTAACGTCGTCGTTTTACACGAATACTTCTGGCGCGAGGATGAAGACGCCGTTCTCGTTCTCGAATTCCTTAAAACGGATTTAGCTTCCGTTATAACGGAGGCGAAGAAAGGTAACGGCAGCGGCGGTGGCGGCGGGGGAGGGATTGCGGTCGGGGAAGTGAAGCGGTGGATGATTCAGATTTTGAGTGGTGTTGATGCTTGTCATCGGAATATGATAGTTCATAGGGATTTGAAACCTAGCAATTTGTTGATTTCTGATGATGGTGTTCTTAAGCTTGCTGATTTTGGACAGGCAAGAATACTCATGGATTCTGGATATGATACATCCAATGAGATCCCACAACCATTTGAGAAGAATTCTTCAGATCAAGTGACTGCTTATCAGCAACCTGCAATCTTTCCTGGAACGGAAAGCCCAGTTCGAGAAGGCAACAGAAATGAAGAGCAGGAACCGGTGAGCAAGGAGGAGTATTTTAGAGTTTTAGATGAGCTCAAAGCGAAAAATTCCACGAATGAGTTTGATAAGGAAACAAATATTTATGATGGAGATGCATCTTGCTTAGCAACGTGCACCACAAGTGATCTAGAAGAGGATCCATTTAAGGGTTCATATTCTTATGAAATGGAGGGGGGAGTTTCTGCAGATGATGGACATGGTTCTCTTACATCGTGTGTTGGAACTCGCTGGTTCAGGGCCCCCGAATTACTGTATGGTTCTACGAACTACGGTTTGGAGATCGACTTATGGTCATTGGGCTGCATTTTTGCGGAGCTTTTTACGTTGCAGCCCCTTTTTCCAGGATCTGCCGACATTGATCAACTTAGCAGAATTTTGAGTACTTTAGGCAACTTGACTGAAGATGTTTGGCCAGGTTGTTCTAAGCTTCCTGATTTTCCAATAATATCATTCAATAAAATAGAAAACCCAGTTGGTCTGGAAGCATGTCTTCCCCACCGTTCTTCAAATGAGATTTCCATAGTTAAAAGACTTGTTTGTTTTGATCCGAGTAACCGAGCGACTGCTATGGAATTGCTACAAGACAAGTACTTCACTGATGAGCCGCTTCCCGTACCCATATCTGATCTGCATGTCCCTTCAACCAGAATTGTGCAGGATGAGGGATCTCCTGGAGGATGGTACGACTACAATGAAATGGAGTCGGATTCTGATATGGATGATCTCGGCCCCTTGAATGTTACCACCAGCGCCACCGGTTACTCCATACAATTCCTTTAA 1452 45.94 MDNPPPKSWSIHTRPEIIQNYQILERVGSGSYSDVYRARRISDDVIVALKEIHDYQSAFREIEALQILQGSPNVVVLHEYFWREDEDAVLVLEFLKTDLASVITEAKKGNGSGGGGGGGIAVGEVKRWMIQILSGVDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQARILMDSGYDTSNEIPQPFEKNSSDQVTAYQQPAIFPGTESPVREGNRNEEQEPVSKEEYFRVLDELKAKNSTNEFDKETNIYDGDASCLATCTTSDLEEDPFKGSYSYEMEGGVSADDGHGSLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTLQPLFPGSADIDQLSRILSTLGNLTEDVWPGCSKLPDFPIISFNKIENPVGLEACLPHRSSNEISIVKRLVCFDPSNRATAMELLQDKYFTDEPLPVPISDLHVPSTRIVQDEGSPGGWYDYNEMESDSDMDDLGPLNVTTSATGYSIQFL 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3860347 3862241 - evm.model.ptg000016l.688 HCH10g0472 552545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0472 483 Gene3D Transferase(Phosphotransferase) domain 1 268 428 - -
HCH10g0472 483 Gene3D Phosphorylase Kinase; domain 1 12 110 - -
HCH10g0472 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0472 483 ProSiteProfiles Protein kinase domain profile. 21 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0472 483 SUPERFAMILY Protein kinase-like (PK-like) 7 439 IPR011009 -
HCH10g0472 483 PANTHER CELL DIVISION PROTEIN KINASE 20 422 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER)
HCH10g0472 483 SMART serkin_6 21 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0472 483 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
HCH10g0472 483 Gene3D Transferase(Phosphotransferase) domain 1 121 257 - -
HCH10g0472 483 Pfam Protein kinase domain 21 177 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0472 483 Pfam Protein kinase domain 291 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0472 483 FunFam Cyclin-dependent kinase F-1 12 106 - -
HCH10g0472 483 MobiDBLite consensus disorder prediction 206 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0472 HCH-Chr10:3860347 HCH12g1497 HCH-Chr12:40968015 4.00E-37 dispersed
HCH10g0472 HCH-Chr10:3860347 HCH2g0832 HCH-Chr2:51828129 1.10E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80985 PF00069 Pkinase 1.60E-31 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0472 - - - 0.0