Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0484 | ATGTCTGACGCCGTCATGTCAGAGAATGATTCCAACGCACTCTCTCCCTCGTGTTCCGTTTCCTCTCCCTCTTCAAAACGGCCGAATAAACGCGGCCGTGAAATAACGAACGGCGGTAGGCATCCGGTTTACCGTGGGGTACGAATGAGAGCATGGGGCAAATGGGTATCCGAAATCCGAGAGCCCAAGAAGAAGAGTCGGATCTGGCTAGGCACTTTCGCCACCCCAGAAATGGCGGCGCGTGCACATGACGTCGCTGCTTTAAGCATCAAAGGCAACTCCGCAATTCTCAACTTCCCTCAACTTGCTTCCTCATTCCCACGCCCAGCCTCAAACTCCCCGCGTGATGTTCAATCAGCTGCTGCTAAAGCTGCTTCCATGCAAATCTCCGATGTCGATGTCGATGCCGATATCGATACTAATCCTACTCCTACTCCTACTCCGCTACCACTTCCACCACCATCTCCTTCACAATTATCGTTTTCTTCATCGTCTTTATCGTCGTTGGAGGAGTCGACACCGGAGGAGTTAAGTGAAATAGTAGAGCTACCAAGTTTAGGAACGAGCTACGACATGTCACCGGAGCCGGTGACGGAGTTCGTATGCGAAGATTCATTGGATGAATGGCTGTATACTTATCCATGGTATCGGAATAATAGCAAGGAAGAAGAAGAAGAGGAAACGTATGGATATTTTAGAGATCAAATGGCAATGGCGGAAATGGAGTGTGTGATTCCCGCTGCCTTTGAAACTTTCTCGTGGTAA | 765 | 49.54 | MSDAVMSENDSNALSPSCSVSSPSSKRPNKRGREITNGGRHPVYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALSIKGNSAILNFPQLASSFPRPASNSPRDVQSAAAKAASMQISDVDVDADIDTNPTPTPTPLPLPPPSPSQLSFSSSSLSSLEESTPEELSEIVELPSLGTSYDMSPEPVTEFVCEDSLDEWLYTYPWYRNNSKEEEEEETYGYFRDQMAMAEMECVIPAAFETFSW | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3943801 | 3944565 | + | evm.model.ptg000016l.676 | HCH10g0484 | 552557 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0484 | 254 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
HCH10g0484 | 254 | Pfam | AP2 domain | 42 | 92 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0484 | 254 | FunFam | Ethylene-responsive transcription factor 2 | 42 | 101 | - | - | |
HCH10g0484 | 254 | Gene3D | AP2/ERF domain | 43 | 101 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0484 | 254 | CDD | AP2 | 44 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0484 | 254 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 25 | 201 | IPR051032 | - | |
HCH10g0484 | 254 | ProSiteProfiles | AP2/ERF domain profile. | 43 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0484 | 254 | MobiDBLite | consensus disorder prediction | 107 | 125 | - | - | |
HCH10g0484 | 254 | PRINTS | Ethylene responsive element binding protein signature | 44 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0484 | 254 | PRINTS | Ethylene responsive element binding protein signature | 66 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0484 | 254 | MobiDBLite | consensus disorder prediction | 107 | 176 | - | - | |
HCH10g0484 | 254 | MobiDBLite | consensus disorder prediction | 158 | 174 | - | - | |
HCH10g0484 | 254 | MobiDBLite | consensus disorder prediction | 143 | 157 | - | - | |
HCH10g0484 | 254 | SMART | rav1_2 | 43 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0484 | 254 | SUPERFAMILY | DNA-binding domain | 43 | 101 | IPR016177 | GO:0003677(InterPro) | |
HCH10g0484 | 254 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0484 | HCH-Chr10:3943801 | HCH12g0749 | HCH-Chr12:4783656 | 2.60E-43 | dispersed | |
HCH10g0484 | HCH-Chr10:3943801 | HCH4g1420 | HCH-Chr4:10429685 | 3.60E-37 | wgd | |
HCH10g0484 | HCH-Chr10:3943801 | HCH6g0162 | HCH-Chr6:2174343 | 3.40E-35 | wgd | |
HCH10g0484 | HCH-Chr10:3943801 | HCH8g0715 | HCH-Chr8:43891189 | 3.20E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32441 | PF00847 | AP2 | 6.50E-14 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0484 | K09286 | - | csv:101212945 | 258.84 |