Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0484 ATGTCTGACGCCGTCATGTCAGAGAATGATTCCAACGCACTCTCTCCCTCGTGTTCCGTTTCCTCTCCCTCTTCAAAACGGCCGAATAAACGCGGCCGTGAAATAACGAACGGCGGTAGGCATCCGGTTTACCGTGGGGTACGAATGAGAGCATGGGGCAAATGGGTATCCGAAATCCGAGAGCCCAAGAAGAAGAGTCGGATCTGGCTAGGCACTTTCGCCACCCCAGAAATGGCGGCGCGTGCACATGACGTCGCTGCTTTAAGCATCAAAGGCAACTCCGCAATTCTCAACTTCCCTCAACTTGCTTCCTCATTCCCACGCCCAGCCTCAAACTCCCCGCGTGATGTTCAATCAGCTGCTGCTAAAGCTGCTTCCATGCAAATCTCCGATGTCGATGTCGATGCCGATATCGATACTAATCCTACTCCTACTCCTACTCCGCTACCACTTCCACCACCATCTCCTTCACAATTATCGTTTTCTTCATCGTCTTTATCGTCGTTGGAGGAGTCGACACCGGAGGAGTTAAGTGAAATAGTAGAGCTACCAAGTTTAGGAACGAGCTACGACATGTCACCGGAGCCGGTGACGGAGTTCGTATGCGAAGATTCATTGGATGAATGGCTGTATACTTATCCATGGTATCGGAATAATAGCAAGGAAGAAGAAGAAGAGGAAACGTATGGATATTTTAGAGATCAAATGGCAATGGCGGAAATGGAGTGTGTGATTCCCGCTGCCTTTGAAACTTTCTCGTGGTAA 765 49.54 MSDAVMSENDSNALSPSCSVSSPSSKRPNKRGREITNGGRHPVYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALSIKGNSAILNFPQLASSFPRPASNSPRDVQSAAAKAASMQISDVDVDADIDTNPTPTPTPLPLPPPSPSQLSFSSSSLSSLEESTPEELSEIVELPSLGTSYDMSPEPVTEFVCEDSLDEWLYTYPWYRNNSKEEEEEETYGYFRDQMAMAEMECVIPAAFETFSW 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3943801 3944565 + evm.model.ptg000016l.676 HCH10g0484 552557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0484 254 MobiDBLite consensus disorder prediction 1 26 - -
HCH10g0484 254 Pfam AP2 domain 42 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0484 254 FunFam Ethylene-responsive transcription factor 2 42 101 - -
HCH10g0484 254 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0484 254 CDD AP2 44 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0484 254 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 201 IPR051032 -
HCH10g0484 254 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0484 254 MobiDBLite consensus disorder prediction 107 125 - -
HCH10g0484 254 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0484 254 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0484 254 MobiDBLite consensus disorder prediction 107 176 - -
HCH10g0484 254 MobiDBLite consensus disorder prediction 158 174 - -
HCH10g0484 254 MobiDBLite consensus disorder prediction 143 157 - -
HCH10g0484 254 SMART rav1_2 43 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0484 254 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677(InterPro)
HCH10g0484 254 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0484 HCH-Chr10:3943801 HCH12g0749 HCH-Chr12:4783656 2.60E-43 dispersed
HCH10g0484 HCH-Chr10:3943801 HCH4g1420 HCH-Chr4:10429685 3.60E-37 wgd
HCH10g0484 HCH-Chr10:3943801 HCH6g0162 HCH-Chr6:2174343 3.40E-35 wgd
HCH10g0484 HCH-Chr10:3943801 HCH8g0715 HCH-Chr8:43891189 3.20E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32441 PF00847 AP2 6.50E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0484 K09286 - csv:101212945 258.84