Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0497 ATGATGATAGTTGTTGTGGCATTGGTTCTTGGTGTTCTAGTGGGAGCTCTAATTTTCATCCCACGAGACCGTAAGCTTGGCAATGCACAAAAGGTCCAATCAAATGCTATGAATAAGCCATCTAAAATCTACAGTAAAGCTGAGGTCTCAGTTCATAATAAAAGAACTGATTGTTGGATTATCATCAAGAATAAGGTGTATGATGTTACCTCCTACGTAGAAGAACATCCGGGAGGAGATGCCATCCTTGTGCATGCTGGTGATGATTCTACAGAAGGGTTTTATGGGCCACAACATGCAACCCGAGTCTTTGACATGATTGAGGACTTCTACATTGGAGACTTGGAGCTGTAA 354 41.81 MMIVVVALVLGVLVGALIFIPRDRKLGNAQKVQSNAMNKPSKIYSKAEVSVHNKRTDCWIIIKNKVYDVTSYVEEHPGGDAILVHAGDDSTEGFYGPQHATRVFDMIEDFYIGDLEL 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4048577 4050919 + evm.model.ptg000016l.663 HCH10g0497 552570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0497 117 PANTHER CYTOCHROME B5 31 115 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
HCH10g0497 117 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 72 79 IPR018506 GO:0020037(InterPro)
HCH10g0497 117 Pfam Cytochrome b5-like Heme/Steroid binding domain 46 115 IPR001199 -
HCH10g0497 117 Gene3D - 34 117 IPR036400 -
HCH10g0497 117 PRINTS Cytochrome B5 signature 66 76 IPR001199 -
HCH10g0497 117 PRINTS Cytochrome B5 signature 76 90 IPR001199 -
HCH10g0497 117 PRINTS Cytochrome B5 signature 103 115 IPR001199 -
HCH10g0497 117 SMART Cyt_b5_2 44 116 IPR001199 -
HCH10g0497 117 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 38 115 IPR036400 -
HCH10g0497 117 FunFam Sulfite oxidase, mitochondrial 39 117 - -
HCH10g0497 117 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 41 116 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0497 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0497 HCH-Chr10:4048577 HCH7g1737 HCH-Chr7:49083367 8.00E-16 dispersed
HCH10g0497 HCH-Chr10:4048577 HCH5g0187 HCH-Chr5:1065721 6.50E-18 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013319 0 3 0 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27