Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0504 ATGAAAACCAAAACGCCATTGAAACAGCTCAAGCTCTCTGTTCCAGCTCAAGAAGCCGCAATTCATTCCTTCTTGACTGCAAGTGGAACATTTCATGATGGCAATCTGCTATTGAATCAGAAAGGCTTGCGCCTTATATCCGAAGAGAAAGAGGCTCCGACTTCAGAATGCAAGGAGCTGGATGTTGATTTCTCGTTGGAGGATCTTGAGACTATGAAAGTCATCGGGAAGGGAAGTGGCGGTGTAGTGCAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCCTAAAGGTCATCCAGATGAACATACAAGAGGATATCCGTAAGCAGATAGTGCAGGAGCTGAAAATAAATCATGCAGCACAATGTCCCCATATCGTGGTGTGCTATCACTCTTTTTATCACAACGGTGCCATTTCTCTCGTGCTAGAATACATGGATCGTGGTTCTTTAGCAGATGTCATCAGACAAGTCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAAAGACATGTTATCCACAGGGACATAAAGCCTTCCAATCTACTAGTGAACCAAAAAGGGGAGGTCAAAATCACTGATTTTGGTGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTTGGGACTTACAATTACATGTCGCCTGAGAGAATTAGCGGGGGCACATATGACTACAGCAGTGATATATGGAGTTTGGGCATGGTAGTACTTGAGTGTGCCATTGGAAGGTTTCCTTATTTGCAATCCGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCAATTGTCGCAAAGCCACCGCCTTCTGCTCCACCGGATCAATTCTCCCCGGAGTTTTGTTCATTTGTATCTGATTGCATTAAGAAGGACCCTCAAGACAGGTCATCCTCTTTGGACCTTCTGAATCATCCTTTCATCAAGAAATTTGAAGACAAAGACATCGAGCTCGAGATTCTCGTCGGAAGCTTGGATCCCCCTGTAAGTTTTCCCAGGTAA 1065 43.19 MKTKTPLKQLKLSVPAQEAAIHSFLTASGTFHDGNLLLNQKGLRLISEEKEAPTSECKELDVDFSLEDLETMKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINHAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNQKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGMVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSDCIKKDPQDRSSSLDLLNHPFIKKFEDKDIELEILVGSLDPPVSFPR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4106576 4109172 - evm.model.ptg000016l.656 HCH10g0504 552577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0504 354 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
HCH10g0504 354 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0504 354 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0504 354 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
HCH10g0504 354 CDD PKc_MAPKK_plant_like 67 333 - -
HCH10g0504 354 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0504 354 SUPERFAMILY Protein kinase-like (PK-like) 67 350 IPR011009 -
HCH10g0504 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0504 354 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
HCH10g0504 354 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 340 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
HCH10g0504 354 Gene3D Transferase(Phosphotransferase) domain 1 150 345 - -
HCH10g0504 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
HCH10g0504 354 PIRSF ILK 2 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0504 HCH-Chr10:4106576 HCH8g0625 HCH-Chr8:43046641 2.30E-122 dispersed
HCH9g0122 HCH-Chr9:669002 HCH10g0504 HCH-Chr10:4106576 9.20E-64 transposed
HCH10g0504 HCH-Chr10:4106576 HCH4g1451 HCH-Chr4:10725516 1.30E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80987 PF00069 Pkinase 1.40E-66 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0504 K04368 - csv:101218848 663.299