Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0505 ATGGCGTCGTGGCAGACTTACGTTGATGAGCATTTGATGTGTGAAATTGAGGGAAATCACCTCACATCTGCTGCTATAATCGGTCATGATGGCGTTGTTTGGGCTCAAACCCCTAATTTCCCTGCGTTTAAGCCTGAAGAAATAACTGGCATCATGAATGACTTTAATGAACCTGGAACGCTTGCTCCAACTGGGTTGTACCTTGGTGGTGCAAAATATATGGTAATCCAAGGAGAGCCGGGAGCTGTTATTCGAGGGAAGAAGGGTCCAGGTGGTGTTACTGTTAAGAAGACTGGCATGGCTCTAGTCATTGGAATCTATGATGAACCAATGGCTCCTGGCCAGTGCAATATGATTGTTGAGAGGCTTGGGGATTATCTCATTGAACAGGGTCTCTAA 399 45.86 MASWQTYVDEHLMCEIEGNHLTSAAIIGHDGVVWAQTPNFPAFKPEEITGIMNDFNEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGMALVIGIYDEPMAPGQCNMIVERLGDYLIEQGL 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4110645 4112156 - evm.model.ptg000016l.655 HCH10g0505 552578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0505 132 CDD PROF 3 131 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 53 67 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 2 15 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 72 81 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 105 118 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 28 41 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 85 100 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 118 131 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PANTHER PROFILIN 1 131 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
HCH10g0505 132 ProSitePatterns Profilin signature. 1 9 IPR027310 GO:0003779(InterPro)
HCH10g0505 132 SMART prof_2 2 132 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 FunFam Profilin 2 132 - -
HCH10g0505 132 SUPERFAMILY Profilin (actin-binding protein) 3 131 IPR036140 -
HCH10g0505 132 Pfam Profilin 3 132 IPR048278 GO:0003779(InterPro)
HCH10g0505 132 Gene3D Dynein light chain 2a, cytoplasmic 1 132 - -
HCH10g0505 132 PRINTS Profilin signature 22 31 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 41 61 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 65 79 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 114 131 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 4 13 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 101 114 IPR005455 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0505 K05759 - - cit:102628130 236.113
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0505 HCH-Chr10:4110645 HCH10g0506 HCH-Chr10:4113823 1.10E-58 tandem
HCH10g0505 HCH-Chr10:4110645 HCH6g0143 HCH-Chr6:1910601 9.20E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.1e-215 743.8
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 1.2e-214 742.3
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.0e-213 739.2
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.3e-213 738.0
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.3e-213 738.0
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.3e-213 738.0
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 1.5e-212 735.3
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 1.2e-214 742.3
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 6.0e-214 740.0
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.1e-212 735.7
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-212 734.9
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 2.4e-210 728.0
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.1e-210 727.6
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.1e-210 727.6
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 5.4e-215 743.4
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.7e-214 741.1
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.1e-213 736.9
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.7e-213 736.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 1.1e-210 729.2
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 8.4e-216 746.1
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.6e-214 741.9
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.6e-214 741.9
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.7e-214 741.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 6.6e-213 736.5
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 8.7e-213 736.1
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 8.7e-213 736.1
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.4e-209 723.8
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.4e-209 723.8
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.6e-209 723.0
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.3e-208 722.2
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 2.9e-208 721.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.4e-207 718.8
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.5e-209 725.3
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.5e-209 725.3
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 4.4e-209 723.8
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-209 723.8
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 9.9e-209 722.6
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 1.7e-208 721.8
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 4.9e-208 720.3
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.6e-217 749.6
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.6e-217 749.6
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.0e-213 739.2
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.0e-213 737.6
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 6.6e-213 736.5
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 8.7e-213 736.1
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT2G19760 77.4 8.0e-57 216.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT2G19760 74.6 2.0e-55 211.8
HCH6g0143 . 1 129 Cytoskeleton Gene Families AT2G19760 69.0 2.3e-51 198.4
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 3.1e-56 214.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT4G29350 75.4 9.8e-55 209.5
HCH6g0143 . 1 130 Cytoskeleton Gene Families AT4G29350 70.8 6.0e-52 200.3
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.4e-64 241.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT4G29340 72.9 3.1e-56 214.5
HCH6g0143 . 1 130 Cytoskeleton Gene Families AT4G29340 69.2 8.0e-52 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112