Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0505 ATGGCGTCGTGGCAGACTTACGTTGATGAGCATTTGATGTGTGAAATTGAGGGAAATCACCTCACATCTGCTGCTATAATCGGTCATGATGGCGTTGTTTGGGCTCAAACCCCTAATTTCCCTGCGTTTAAGCCTGAAGAAATAACTGGCATCATGAATGACTTTAATGAACCTGGAACGCTTGCTCCAACTGGGTTGTACCTTGGTGGTGCAAAATATATGGTAATCCAAGGAGAGCCGGGAGCTGTTATTCGAGGGAAGAAGGGTCCAGGTGGTGTTACTGTTAAGAAGACTGGCATGGCTCTAGTCATTGGAATCTATGATGAACCAATGGCTCCTGGCCAGTGCAATATGATTGTTGAGAGGCTTGGGGATTATCTCATTGAACAGGGTCTCTAA 399 45.86 MASWQTYVDEHLMCEIEGNHLTSAAIIGHDGVVWAQTPNFPAFKPEEITGIMNDFNEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGMALVIGIYDEPMAPGQCNMIVERLGDYLIEQGL 132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4110645 4112156 - evm.model.ptg000016l.655 HCH10g0505 552578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0505 132 CDD PROF 3 131 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 53 67 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 2 15 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 72 81 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 105 118 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 28 41 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 85 100 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Plant profilin signature 118 131 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PANTHER PROFILIN 1 131 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
HCH10g0505 132 ProSitePatterns Profilin signature. 1 9 IPR027310 GO:0003779(InterPro)
HCH10g0505 132 SMART prof_2 2 132 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 FunFam Profilin 2 132 - -
HCH10g0505 132 SUPERFAMILY Profilin (actin-binding protein) 3 131 IPR036140 -
HCH10g0505 132 Pfam Profilin 3 132 IPR048278 GO:0003779(InterPro)
HCH10g0505 132 Gene3D Dynein light chain 2a, cytoplasmic 1 132 - -
HCH10g0505 132 PRINTS Profilin signature 22 31 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 41 61 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 65 79 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 114 131 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 4 13 IPR005455 GO:0003779(InterPro)
HCH10g0505 132 PRINTS Profilin signature 101 114 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0505 HCH-Chr10:4110645 HCH10g0506 HCH-Chr10:4113823 1.10E-58 tandem
HCH10g0505 HCH-Chr10:4110645 HCH6g0143 HCH-Chr6:1910601 9.20E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0505 K05759 - cit:102628130 236.113