Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0505 | ATGGCGTCGTGGCAGACTTACGTTGATGAGCATTTGATGTGTGAAATTGAGGGAAATCACCTCACATCTGCTGCTATAATCGGTCATGATGGCGTTGTTTGGGCTCAAACCCCTAATTTCCCTGCGTTTAAGCCTGAAGAAATAACTGGCATCATGAATGACTTTAATGAACCTGGAACGCTTGCTCCAACTGGGTTGTACCTTGGTGGTGCAAAATATATGGTAATCCAAGGAGAGCCGGGAGCTGTTATTCGAGGGAAGAAGGGTCCAGGTGGTGTTACTGTTAAGAAGACTGGCATGGCTCTAGTCATTGGAATCTATGATGAACCAATGGCTCCTGGCCAGTGCAATATGATTGTTGAGAGGCTTGGGGATTATCTCATTGAACAGGGTCTCTAA | 399 | 45.86 | MASWQTYVDEHLMCEIEGNHLTSAAIIGHDGVVWAQTPNFPAFKPEEITGIMNDFNEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTGMALVIGIYDEPMAPGQCNMIVERLGDYLIEQGL | 132 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4110645 | 4112156 | - | evm.model.ptg000016l.655 | HCH10g0505 | 552578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0505 | 132 | CDD | PROF | 3 | 131 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Plant profilin signature | 53 | 67 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Plant profilin signature | 2 | 15 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Plant profilin signature | 72 | 81 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Plant profilin signature | 105 | 118 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Plant profilin signature | 28 | 41 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Plant profilin signature | 85 | 100 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Plant profilin signature | 118 | 131 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PANTHER | PROFILIN | 1 | 131 | IPR005455 | GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER) | |
HCH10g0505 | 132 | ProSitePatterns | Profilin signature. | 1 | 9 | IPR027310 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | SMART | prof_2 | 2 | 132 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | FunFam | Profilin | 2 | 132 | - | - | |
HCH10g0505 | 132 | SUPERFAMILY | Profilin (actin-binding protein) | 3 | 131 | IPR036140 | - | |
HCH10g0505 | 132 | Pfam | Profilin | 3 | 132 | IPR048278 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 132 | - | - | |
HCH10g0505 | 132 | PRINTS | Profilin signature | 22 | 31 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Profilin signature | 41 | 61 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Profilin signature | 65 | 79 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Profilin signature | 114 | 131 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Profilin signature | 4 | 13 | IPR005455 | GO:0003779(InterPro) | |
HCH10g0505 | 132 | PRINTS | Profilin signature | 101 | 114 | IPR005455 | GO:0003779(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0505 | HCH-Chr10:4110645 | HCH10g0506 | HCH-Chr10:4113823 | 1.10E-58 | tandem | |
HCH10g0505 | HCH-Chr10:4110645 | HCH6g0143 | HCH-Chr6:1910601 | 9.20E-53 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0505 | K05759 | - | cit:102628130 | 236.113 |