Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0506 ATGTCTTGGCAAACGTACGTTGATGATCATTTGATGTGTGATATTGATGGCCAAGGCCAGCACCTCACTGCTGCTGCTATTATCGGCCACGATGGTAGTGTTTGGGCTCAGAGCTCTTCATTTCCTCAGTTCAAGCCTCAGGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGTCATCTTGCACCTACTGGTTTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGGTCTGGAGGGACTACCATAAAAAAGACTGGTCAAGCTTTAGTTTTTGGCATTTATGAAGAACCTGTTACTCCAGGACAATGCAACATGGTCGTCGAAAGGCTGGGCGATTACCTCGTGGATCAGGGTCTGTAG 402 47.51 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPQEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGTTIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4113823 4114893 - evm.model.ptg000016l.654 HCH10g0506 552579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0506 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
HCH10g0506 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
HCH10g0506 133 FunFam Profilin 1 133 - -
HCH10g0506 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
HCH10g0506 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
HCH10g0506 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
HCH10g0506 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0506 K05759 - - csv:101219322 257.684
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0506 HCH-Chr10:4113823 HCH6g0143 HCH-Chr6:1910601 1.60E-57 dispersed
HCH10g0505 HCH-Chr10:4110645 HCH10g0506 HCH-Chr10:4113823 1.10E-58 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.1e-215 743.8
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 1.2e-214 742.3
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.0e-213 739.2
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.3e-213 738.0
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.3e-213 738.0
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.3e-213 738.0
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 1.5e-212 735.3
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 1.2e-214 742.3
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 6.0e-214 740.0
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.1e-212 735.7
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-212 734.9
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 2.4e-210 728.0
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.1e-210 727.6
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.1e-210 727.6
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 5.4e-215 743.4
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.7e-214 741.1
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.1e-213 736.9
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.7e-213 736.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 1.1e-210 729.2
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 8.4e-216 746.1
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.6e-214 741.9
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.6e-214 741.9
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.7e-214 741.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 6.6e-213 736.5
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 8.7e-213 736.1
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 8.7e-213 736.1
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.4e-209 723.8
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.4e-209 723.8
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.6e-209 723.0
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.3e-208 722.2
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 2.9e-208 721.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.4e-207 718.8
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.5e-209 725.3
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.5e-209 725.3
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 4.4e-209 723.8
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-209 723.8
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 9.9e-209 722.6
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 1.7e-208 721.8
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 4.9e-208 720.3
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.6e-217 749.6
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.6e-217 749.6
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.0e-213 739.2
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.0e-213 737.6
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 6.6e-213 736.5
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 8.7e-213 736.1
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT2G19760 77.4 8.0e-57 216.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT2G19760 74.6 2.0e-55 211.8
HCH6g0143 . 1 129 Cytoskeleton Gene Families AT2G19760 69.0 2.3e-51 198.4
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 3.1e-56 214.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT4G29350 75.4 9.8e-55 209.5
HCH6g0143 . 1 130 Cytoskeleton Gene Families AT4G29350 70.8 6.0e-52 200.3
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.4e-64 241.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT4G29340 72.9 3.1e-56 214.5
HCH6g0143 . 1 130 Cytoskeleton Gene Families AT4G29340 69.2 8.0e-52 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112