Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0506 | ATGTCTTGGCAAACGTACGTTGATGATCATTTGATGTGTGATATTGATGGCCAAGGCCAGCACCTCACTGCTGCTGCTATTATCGGCCACGATGGTAGTGTTTGGGCTCAGAGCTCTTCATTTCCTCAGTTCAAGCCTCAGGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGTCATCTTGCACCTACTGGTTTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGGTCTGGAGGGACTACCATAAAAAAGACTGGTCAAGCTTTAGTTTTTGGCATTTATGAAGAACCTGTTACTCCAGGACAATGCAACATGGTCGTCGAAAGGCTGGGCGATTACCTCGTGGATCAGGGTCTGTAG | 402 | 47.51 | MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPQEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGTTIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL | 133 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 4113823 | 4114893 | - | evm.model.ptg000016l.654 | HCH10g0506 | 552579 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0506 | 133 | Pfam | Profilin | 1 | 132 | IPR048278 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PANTHER | PROFILIN | 1 | 132 | IPR005455 | GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER) | |
| HCH10g0506 | 133 | FunFam | Profilin | 1 | 133 | - | - | |
| HCH10g0506 | 133 | PRINTS | Plant profilin signature | 29 | 42 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Plant profilin signature | 73 | 82 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Plant profilin signature | 119 | 132 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Plant profilin signature | 54 | 68 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Plant profilin signature | 86 | 101 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Plant profilin signature | 106 | 119 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 133 | - | - | |
| HCH10g0506 | 133 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Profilin signature | 66 | 80 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Profilin signature | 42 | 62 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Profilin signature | 102 | 115 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Profilin signature | 115 | 132 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | PRINTS | Profilin signature | 23 | 32 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | SMART | prof_2 | 1 | 133 | IPR005455 | GO:0003779(InterPro) | |
| HCH10g0506 | 133 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 132 | IPR036140 | - | |
| HCH10g0506 | 133 | CDD | PROF | 2 | 132 | IPR005455 | GO:0003779(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0506 | HCH-Chr10:4113823 | HCH6g0143 | HCH-Chr6:1910601 | 1.60E-57 | dispersed | |
| HCH10g0505 | HCH-Chr10:4110645 | HCH10g0506 | HCH-Chr10:4113823 | 1.10E-58 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0506 | K05759 | - | csv:101219322 | 257.684 |