Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0513 ATGAAGATCGTGGATTTAGAAGAAGTAGGGACTGATCGCGATGGAGAAGAAATTGGGAGTAATCAGATTGTGAAAGTTGATGCTAAAAGAGCATTAGTTGGGGCTGGAGCTCGAATCCTGTTTTACCCCACTCTTTTGTATAACGTTCTTAGGAACAAAATGGAAACTGAATTTAGATGGTGGGATGAAGTTGATCAGTTTCTTTTGCTGGGTGCAGTACCCTTTCCCAAAGACGTGCCTAGACTGAAGCAGCTTGGTGTTGGTGGCGTTATCACTTTGAATGAATCTTATGAAACACTAGTTCCATCTTCCTTATACTATCGCCATGGAATTGACCACTTAACAATTCCGACAAGAGATTATTGTTTTGCTCCTAAATTTTCTGATATTTGCCGAGCTGTGGACTTTATTCACAGAAATGCATCTTGTGGTAAAACAACATATGTCCATTGTAAAGCAGGGCGAGGAAGGAGCACAACCATTGTGCTTTGTTATTTGGTCAAATATAAGCACATGACACCTTCTACTGCCCTGGAATATGTTCGCTCCAGAAGACCTCGAGTGTTATTAGCCCCTTCACAGTGGGAGGCTGTTCAAGAGTACAGCAACCGTCGACCAGTTACAAATTCGTGCTCTCCCTCAGGGGATGCAGTCCTCATTACAAAAGACGATCTCGAAGGATATCACGGTACATGCATTGACAGTGCAGGTAGAGAACTTGCACTTATTCCTGGAGGGTCCAAGGCAAAGCCCATGATATCAAGACTGTCTTGCCTTTTTGCCTCTTTAATGATTCATGGCAGTAGCGGATCCCTTATAAAGCGTCTGCCTGTTTCGGAGGCTCGTGCTTGTTGA 855 43.63 MKIVDLEEVGTDRDGEEIGSNQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMETEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNESYETLVPSSLYYRHGIDHLTIPTRDYCFAPKFSDICRAVDFIHRNASCGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSTALEYVRSRRPRVLLAPSQWEAVQEYSNRRPVTNSCSPSGDAVLITKDDLEGYHGTCIDSAGRELALIPGGSKAKPMISRLSCLFASLMIHGSSGSLIKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4150260 4152811 + evm.model.ptg000016l.647 HCH10g0513 552586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0513 284 Gene3D Protein tyrosine phosphatase superfamily 60 206 IPR029021 -
HCH10g0513 284 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 12 255 - -
HCH10g0513 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470(InterPro)
HCH10g0513 284 SMART dsp_5 63 204 IPR020422 GO:0006470(InterPro)
HCH10g0513 284 Pfam Dual specificity phosphatase, catalytic domain 82 203 IPR000340 GO:0016311(InterPro)
HCH10g0513 284 FunFam Dual specificity phosphatase domain protein 60 207 - -
HCH10g0513 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
HCH10g0513 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311(InterPro)
HCH10g0513 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 202 IPR029021 -
HCH10g0513 284 CDD PTPMT1 60 204 IPR044596 GO:0004721(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0513 HCH-Chr10:4150260 HCH6g1038 HCH-Chr6:45109806 1.30E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0513 - - - 0.0