Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0519 ATGATACTCGGCGAAAACCCAAACCGCTCTAACTCAACGGTTCACGTTCCACCGTGGACGTTTCTAGACGATCCGTCACCGTTAAGTGGCGTTTCCGTTAACTTCGACGGCAATGCAAACGCCACCGATTACTCTCCATTTTATCTTCAGGAAGCCCTAACGGCGCTACAGCTGTACTTGCCGTCGGTAACCGAGGCGGAAATCGATTCCGATTACGAATCGGAATCTACGGTGGTGACGGACGTGTTCTCGTCGGATCAGTTCCGGATGTTTGATTTCAAAGTGAAGAAATGCACACGCGGAAGGTCGCACGATTGGACGGAGTGTCCGTACGCACATCCCGGCGAGAAAGCTCGCCGGCGGGATCCGAGGAGGTATCATTATTCAGGCACGGCGTGTGCGGAGTTTAGGAAGGGGAATTGCAAGAGAGGAGATTCGTGCGAATTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCTTCTCGTTATCGGACTCAGCCATGCAAAGACGGAACGAGTTGTCGGAGGAGAGTTTGTTTCTTCGCTCACACAGCGGAGCAACTTAGGGTTTTACCTCAGCAAATTCTTAGTCCTAGCTCTACTCGGAGTGTTAATTCGATTCCTTCTTATGATGGATCTCCTCTTCGACAAGCTATCGAGGCCTGCGCTAAACAGATTACGTTTTCCCCCTTGTCTCCGCCGTCGTTATCGCCGCCGGTTACTCCTAAGGCGGAGTTATTGTCCTCATCGCCGCCGCAATCGCCGATGATTCATTCTATGGTTGCGAATCTGAGAAATTTGGAGCTCAATAAGGAGCTAGGGTTAGGGCAAGGGAAAGTCAAATCCCCTTCCTCCTCGCCGTGGAATGTTCAAGTCGGGTCACCTTTATCCGTGACCCGACCCGGTTATTGTAGCCTGCCTACCACGCCCACACGTCCTGGAATTCGTTTTCTGGATTTTTGGGATCTTAGTTGCGGAGAGGAACCGGCAATGGAGCGTGTTGAATCCGGGCGAGATTTGCGAGCGAAAATGTTTGCGAAATTGAGGAAGGAAAATTCCGTTGGCGTTCCTGACGAAGATTCATCCATCGGCGGCGGCGGTTTGGATGTCGGTTGGGTTTCAGAGCTGATTAAGTAA 1137 51.45 MILGENPNRSNSTVHVPPWTFLDDPSPLSGVSVNFDGNANATDYSPFYLQEALTALQLYLPSVTEAEIDSDYESESTVVTDVFSSDQFRMFDFKVKKCTRGRSHDWTECPYAHPGEKARRRDPRRYHYSGTACAEFRKGNCKRGDSCEFAHGVFECWLHPSRYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQILSPSSTRSVNSIPSYDGSPLRQAIEACAKQITFSPLSPPSLSPPVTPKAELLSSSPPQSPMIHSMVANLRNLELNKELGLGQGKVKSPSSSPWNVQVGSPLSVTRPGYCSLPTTPTRPGIRFLDFWDLSCGEEPAMERVESGRDLRAKMFAKLRKENSVGVPDEDSSIGGGGLDVGWVSELIK 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4214361 4215497 + evm.model.ptg000016l.641 HCH10g0519 552592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0519 378 Gene3D - 128 190 - -
HCH10g0519 378 MobiDBLite consensus disorder prediction 233 252 - -
HCH10g0519 378 SMART c3hfinal6 127 153 IPR000571 GO:0046872(InterPro)
HCH10g0519 378 SMART c3hfinal6 162 185 IPR000571 GO:0046872(InterPro)
HCH10g0519 378 FunFam Zinc finger CCCH domain-containing protein 66 85 153 - -
HCH10g0519 378 ProSiteProfiles Zinc finger C3H1-type profile. 128 154 IPR000571 GO:0046872(InterPro)
HCH10g0519 378 PANTHER UNKEMPT FAMILY MEMBER 45 378 IPR045234 -
HCH10g0519 378 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 152 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0519 HCH-Chr10:4214361 HCH12g0523 HCH-Chr12:3042949 1.30E-78 dispersed
HCH10g0519 HCH-Chr10:4214361 HCH4g0558 HCH-Chr4:3609386 2.00E-60 wgd
HCH10g0519 HCH-Chr10:4214361 HCH8g0682 HCH-Chr8:43524013 4.10E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32443 PF00642 zf-CCCH 2.10E-06 CL0537 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0519 - - - 0.0