Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0548 ATGACTTCTGTGGCAGTTGCCGTTAACGGCGGAAGAAGCGGCGGCGGCGGCGGAGGTAGTAGACGCGCCGTCAGATGGGCCGTCGAGAATCTCTCGCCAACTGCTGATCGTTTCACTTTGGTTCACGTTATGCCCAAAGTCACCTCCATTCCCACCCCAATGGGGGATAGTGTCCCTGTCTCTGAACTAGATTCCAATGTGGTATCACTTTACTTGCATGATGTGAGAGAGAAATATGAGAAAGTTTTTATCCCATTTAAGAAGTTATGTAGAAAAGAGAAGTTTCTTTTTCAGGTCGAAACTTTGGTTTTGGAGGATCATAATCCTGCGAATGCGCTTCTAAGGTTCATGTCTGAATCAGGGATTAGATGCTTGGTTTTGGGTTCTTGCTTCACAAGTTGTATAGCAAGGAAGCTTAAAGGGCCTTCGGTACCCTCTACGATTCTTAGATCTGCTCCTGGTTCTTATAACATTTATGTTATATATAAGAGAAGAATCGTCACAAGAACAACTAGTTCTTCATCTACTGATCTTGCAGAACCTGATTCAAGGCAGTGGATGCTTGGTGATACTGATTACTACAGGGGTTCCGGCAGCATTAGTGAACAATCATCTGGGGGGTTTTCTTCCTTTTGGAAATCAAATGTTCATCGAACCACTTCCGGTCCAGAAGGGCGTCTCAATGATATGGGAGATAACCTTGAAGCTAATACTATTGAGCAACCAAATTCTTTGACTCCTCTTACTGAGGAGGAAGATGCGCAAGCTGAAATTGAATCGCTGCAGCTAGAGCTAGAAACCACTCTTTCCATGTACAAACGAGCTTGTGAAGAACTAGTACATGCTCAAATTAAGGTTCAGTCACTGACATCTGAATGCCTTCAAGAATCGAAAAGGGTGAATGCTGCCTCGGAAAGAGAACAAAATTTGAGAGAAGTTGCTGCTGAAGAGAAAGCAAAGCATTTGGAAGCTAAGAAGGAGCTGGAAGAGGCAAAAGATCTGCTGGCTAAAGAGGCTTATGAAAGGCAGCTGGCTGAACTTAATGCCTTAAAGGAGTCTTTGGAGAAGCAGAAAATTGTTAATACTCTCATGTCAAATGATAGGAGGTACAGAAGATATACTAAGGATGAAATCGAGGCAGCAACGAATTTCTTTGCTGAAGAAAATGTGATCGGTGAGGGAGGATATGGAAAAGTTTACAAATGCAGTCTTGATCATACCCCTGTAGCTATTAAGGTTCTTCAACATGATGGATTTAACAAAAAAGACGAGTTTTTGAAAGAGGTCGAAATCCTGAGCCACATACGTCATCCGAACTTGGTTTTGCTGCTAGGAGCTTGTCCAGAGAGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCCTGGATGAACATATCTTGCTCCAAAATGGAAAACCTCCCCTCCCATGGTTTATCAGGTTTAGGATAGTTTTTCAAGTAGCTTCTGGGCTGGTATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATCGAGATCTAAAACCGGGTAATATCTTAGTAAACAGAAACTATGTAAGCAAAATCTCAGACGTGGGGATGGCTAAAATCATTGGAGATATCGTGCCCGACAATGTCACAGAGTACAGAAATACCATTCTTGCTGGTACCCTTCACTATATGGATCCCGAGTATCAGAGAACTGGTACCCTTCGGCCTAAGTCGGACACATATGCGCTCGGTGTTACGACTCTCCAACTGTTGACAGGCCGGCAGCCACACGGTCTTCTTCTGGCTGTTGAGAATTCCATTGCAAGCGCCTCCCTGGCAGATATACTAGATAGGTCGATTACTGACTGGCCGCTTGCAGAAACAGAAGAGTTGGCTCGACTTGCATTGAAGTGCTCAAAGCTTAGATGCAGTGATAGACCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATGCTTGTCAAAATGAAGATAAAATTACTGCCAATCCCCCAAGCCACTACTTCTGTCCAATCCTTCAGGAAATAATGGAGGATCCTTATATAGCAGCTGATGGATTCACTTATGAGTATATGGCCATTAAAGCATGGCTTGAAAAACACAATTTATCACCAGTGACAAAGCTGAAGCTCCAGCATTCTCTATTAATTCCTAATCACACTATACGTTCTGCCATACAGGAGTGGAGGTCACGAGTGACATTTCCATCTTCCTAA 2229 43.11 MTSVAVAVNGGRSGGGGGGSRRAVRWAVENLSPTADRFTLVHVMPKVTSIPTPMGDSVPVSELDSNVVSLYLHDVREKYEKVFIPFKKLCRKEKFLFQVETLVLEDHNPANALLRFMSESGIRCLVLGSCFTSCIARKLKGPSVPSTILRSAPGSYNIYVIYKRRIVTRTTSSSSTDLAEPDSRQWMLGDTDYYRGSGSISEQSSGGFSSFWKSNVHRTTSGPEGRLNDMGDNLEANTIEQPNSLTPLTEEEDAQAEIESLQLELETTLSMYKRACEELVHAQIKVQSLTSECLQESKRVNAASEREQNLREVAAEEKAKHLEAKKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVNTLMSNDRRYRRYTKDEIEAATNFFAEENVIGEGGYGKVYKCSLDHTPVAIKVLQHDGFNKKDEFLKEVEILSHIRHPNLVLLLGACPERGCLIYEYMENGSLDEHILLQNGKPPLPWFIRFRIVFQVASGLVFLHNSKPEPIIHRDLKPGNILVNRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTTLQLLTGRQPHGLLLAVENSIASASLADILDRSITDWPLAETEELARLALKCSKLRCSDRPDLETEVLPVLKRLVDFADACQNEDKITANPPSHYFCPILQEIMEDPYIAADGFTYEYMAIKAWLEKHNLSPVTKLKLQHSLLIPNHTIRSAIQEWRSRVTFPSS 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4428183 4432246 + evm.model.ptg000016l.612 HCH10g0548 552621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0548 742 SUPERFAMILY Protein kinase-like (PK-like) 366 641 IPR011009 -
HCH10g0548 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0548 742 Coils Coil 300 360 - -
HCH10g0548 742 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 357 457 - -
HCH10g0548 742 Gene3D Phosphorylase Kinase; domain 1 362 457 - -
HCH10g0548 742 MobiDBLite consensus disorder prediction 1 21 - -
HCH10g0548 742 ProSiteProfiles U-box domain profile. 667 740 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g0548 742 Gene3D Transferase(Phosphotransferase) domain 1 458 667 - -
HCH10g0548 742 CDD STK_N 3 163 - -
HCH10g0548 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 2 151 - -
HCH10g0548 742 Pfam Protein tyrosine and serine/threonine kinase 388 641 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0548 742 ProSitePatterns Protein kinases ATP-binding region signature. 391 412 IPR017441 GO:0005524(InterPro)
HCH10g0548 742 Coils Coil 251 271 - -
HCH10g0548 742 Pfam U-box domain 669 734 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g0548 742 ProSiteProfiles Protein kinase domain profile. 385 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0548 742 PANTHER OS02G0152300 PROTEIN 4 731 IPR051348 -
HCH10g0548 742 CDD RING-Ubox_WDSUB1-like 669 723 - -
HCH10g0548 742 Gene3D HUPs 1 156 IPR014729 -
HCH10g0548 742 SUPERFAMILY RING/U-box 659 736 - -
HCH10g0548 742 SMART Ubox_2 671 733 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g0548 742 SMART serkin_6 385 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0548 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 738 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0548 HCH-Chr10:4428183 HCH12g0288 HCH-Chr12:1615446 1.60E-114 dispersed
HCH5g0667 HCH-Chr5:4825162 HCH10g0548 HCH-Chr10:4428183 6.20E-123 transposed
HCH10g0548 HCH-Chr10:4428183 HCH4g1495 HCH-Chr4:11307642 9.00E-113 wgd
HCH10g0548 HCH-Chr10:4428183 HCH4g0521 HCH-Chr4:3418413 1.40E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80989 PF07714 PK_Tyr_Ser-Thr 4.50E-40 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0548 - - - 0.0