Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0548 ATGACTTCTGTGGCAGTTGCCGTTAACGGCGGAAGAAGCGGCGGCGGCGGCGGAGGTAGTAGACGCGCCGTCAGATGGGCCGTCGAGAATCTCTCGCCAACTGCTGATCGTTTCACTTTGGTTCACGTTATGCCCAAAGTCACCTCCATTCCCACCCCAATGGGGGATAGTGTCCCTGTCTCTGAACTAGATTCCAATGTGGTATCACTTTACTTGCATGATGTGAGAGAGAAATATGAGAAAGTTTTTATCCCATTTAAGAAGTTATGTAGAAAAGAGAAGTTTCTTTTTCAGGTCGAAACTTTGGTTTTGGAGGATCATAATCCTGCGAATGCGCTTCTAAGGTTCATGTCTGAATCAGGGATTAGATGCTTGGTTTTGGGTTCTTGCTTCACAAGTTGTATAGCAAGGAAGCTTAAAGGGCCTTCGGTACCCTCTACGATTCTTAGATCTGCTCCTGGTTCTTATAACATTTATGTTATATATAAGAGAAGAATCGTCACAAGAACAACTAGTTCTTCATCTACTGATCTTGCAGAACCTGATTCAAGGCAGTGGATGCTTGGTGATACTGATTACTACAGGGGTTCCGGCAGCATTAGTGAACAATCATCTGGGGGGTTTTCTTCCTTTTGGAAATCAAATGTTCATCGAACCACTTCCGGTCCAGAAGGGCGTCTCAATGATATGGGAGATAACCTTGAAGCTAATACTATTGAGCAACCAAATTCTTTGACTCCTCTTACTGAGGAGGAAGATGCGCAAGCTGAAATTGAATCGCTGCAGCTAGAGCTAGAAACCACTCTTTCCATGTACAAACGAGCTTGTGAAGAACTAGTACATGCTCAAATTAAGGTTCAGTCACTGACATCTGAATGCCTTCAAGAATCGAAAAGGGTGAATGCTGCCTCGGAAAGAGAACAAAATTTGAGAGAAGTTGCTGCTGAAGAGAAAGCAAAGCATTTGGAAGCTAAGAAGGAGCTGGAAGAGGCAAAAGATCTGCTGGCTAAAGAGGCTTATGAAAGGCAGCTGGCTGAACTTAATGCCTTAAAGGAGTCTTTGGAGAAGCAGAAAATTGTTAATACTCTCATGTCAAATGATAGGAGGTACAGAAGATATACTAAGGATGAAATCGAGGCAGCAACGAATTTCTTTGCTGAAGAAAATGTGATCGGTGAGGGAGGATATGGAAAAGTTTACAAATGCAGTCTTGATCATACCCCTGTAGCTATTAAGGTTCTTCAACATGATGGATTTAACAAAAAAGACGAGTTTTTGAAAGAGGTCGAAATCCTGAGCCACATACGTCATCCGAACTTGGTTTTGCTGCTAGGAGCTTGTCCAGAGAGAGGTTGCTTGATCTATGAATACATGGAAAATGGAAGCCTGGATGAACATATCTTGCTCCAAAATGGAAAACCTCCCCTCCCATGGTTTATCAGGTTTAGGATAGTTTTTCAAGTAGCTTCTGGGCTGGTATTTTTACACAATTCAAAGCCAGAGCCTATTATTCATCGAGATCTAAAACCGGGTAATATCTTAGTAAACAGAAACTATGTAAGCAAAATCTCAGACGTGGGGATGGCTAAAATCATTGGAGATATCGTGCCCGACAATGTCACAGAGTACAGAAATACCATTCTTGCTGGTACCCTTCACTATATGGATCCCGAGTATCAGAGAACTGGTACCCTTCGGCCTAAGTCGGACACATATGCGCTCGGTGTTACGACTCTCCAACTGTTGACAGGCCGGCAGCCACACGGTCTTCTTCTGGCTGTTGAGAATTCCATTGCAAGCGCCTCCCTGGCAGATATACTAGATAGGTCGATTACTGACTGGCCGCTTGCAGAAACAGAAGAGTTGGCTCGACTTGCATTGAAGTGCTCAAAGCTTAGATGCAGTGATAGACCAGATCTTGAAACTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATGCTTGTCAAAATGAAGATAAAATTACTGCCAATCCCCCAAGCCACTACTTCTGTCCAATCCTTCAGGAAATAATGGAGGATCCTTATATAGCAGCTGATGGATTCACTTATGAGTATATGGCCATTAAAGCATGGCTTGAAAAACACAATTTATCACCAGTGACAAAGCTGAAGCTCCAGCATTCTCTATTAATTCCTAATCACACTATACGTTCTGCCATACAGGAGTGGAGGTCACGAGTGACATTTCCATCTTCCTAA 2229 43.11 MTSVAVAVNGGRSGGGGGGSRRAVRWAVENLSPTADRFTLVHVMPKVTSIPTPMGDSVPVSELDSNVVSLYLHDVREKYEKVFIPFKKLCRKEKFLFQVETLVLEDHNPANALLRFMSESGIRCLVLGSCFTSCIARKLKGPSVPSTILRSAPGSYNIYVIYKRRIVTRTTSSSSTDLAEPDSRQWMLGDTDYYRGSGSISEQSSGGFSSFWKSNVHRTTSGPEGRLNDMGDNLEANTIEQPNSLTPLTEEEDAQAEIESLQLELETTLSMYKRACEELVHAQIKVQSLTSECLQESKRVNAASEREQNLREVAAEEKAKHLEAKKELEEAKDLLAKEAYERQLAELNALKESLEKQKIVNTLMSNDRRYRRYTKDEIEAATNFFAEENVIGEGGYGKVYKCSLDHTPVAIKVLQHDGFNKKDEFLKEVEILSHIRHPNLVLLLGACPERGCLIYEYMENGSLDEHILLQNGKPPLPWFIRFRIVFQVASGLVFLHNSKPEPIIHRDLKPGNILVNRNYVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTTLQLLTGRQPHGLLLAVENSIASASLADILDRSITDWPLAETEELARLALKCSKLRCSDRPDLETEVLPVLKRLVDFADACQNEDKITANPPSHYFCPILQEIMEDPYIAADGFTYEYMAIKAWLEKHNLSPVTKLKLQHSLLIPNHTIRSAIQEWRSRVTFPSS 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4428183 4432246 + evm.model.ptg000016l.612 HCH10g0548 552621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0548 742 SUPERFAMILY Protein kinase-like (PK-like) 366 641 IPR011009 -
HCH10g0548 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0548 742 Coils Coil 300 360 - -
HCH10g0548 742 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 357 457 - -
HCH10g0548 742 Gene3D Phosphorylase Kinase; domain 1 362 457 - -
HCH10g0548 742 MobiDBLite consensus disorder prediction 1 21 - -
HCH10g0548 742 ProSiteProfiles U-box domain profile. 667 740 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g0548 742 Gene3D Transferase(Phosphotransferase) domain 1 458 667 - -
HCH10g0548 742 CDD STK_N 3 163 - -
HCH10g0548 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 2 151 - -
HCH10g0548 742 Pfam Protein tyrosine and serine/threonine kinase 388 641 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0548 742 ProSitePatterns Protein kinases ATP-binding region signature. 391 412 IPR017441 GO:0005524(InterPro)
HCH10g0548 742 Coils Coil 251 271 - -
HCH10g0548 742 Pfam U-box domain 669 734 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g0548 742 ProSiteProfiles Protein kinase domain profile. 385 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0548 742 PANTHER OS02G0152300 PROTEIN 4 731 IPR051348 -
HCH10g0548 742 CDD RING-Ubox_WDSUB1-like 669 723 - -
HCH10g0548 742 Gene3D HUPs 1 156 IPR014729 -
HCH10g0548 742 SUPERFAMILY RING/U-box 659 736 - -
HCH10g0548 742 SMART Ubox_2 671 733 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH10g0548 742 SMART serkin_6 385 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0548 742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 738 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0548 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0548 HCH-Chr10:4428183 HCH12g0288 HCH-Chr12:1615446 1.60E-114 dispersed
HCH5g0667 HCH-Chr5:4825162 HCH10g0548 HCH-Chr10:4428183 6.20E-123 transposed
HCH10g0548 HCH-Chr10:4428183 HCH4g1495 HCH-Chr4:11307642 9.00E-113 wgd
HCH10g0548 HCH-Chr10:4428183 HCH4g0521 HCH-Chr4:3418413 1.40E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0548 . 2 736 Plant U-box Gene Family AT5G57035 51.3 5.4e-217 751.1
HCH1g0278 . 197 431 Plant U-box Gene Family AT5G05230 59.8 1.4e-71 266.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008876 1 1 1 2 1 0 2 1 1 1 1 0 1 1 1 1 0 0 1 0 1 1 0 1 1 1 1 1 2 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80989 PF07714 PK_Tyr_Ser-Thr 4.50E-40 CL0016 HCH PK