Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0549 ATGCCATTAATGAAGAAAGATAGTTCCATGAATTCTAATCTGAGTCTTATTCTCCCTCCTCCTGACGAAGTTTCTTTCGTCAAATTCATAACTAAAAGCGGTACTTTTACTGATGGCGATTTGCTCGTTAATAGAGACGGAGTGAGGATTGTTTCTCAGAATGAGGATGAAATTCCTCCACCAATTAAGCCTTCAGATTCAGACAACCATCTGTCTTTAGTAGATTTGGATACAATTAAAGTCATTGGGAAAGGAAATGGTGGAATTGTCCAATTAGTGAGACATAAATGGACTAACCAGTTTTTTGCACTAAAGGTAATTCAGATGAACGGTGAGGAATCTCATTGTAGAATGATTGCACAGGAACTAAAAATTAATCAGTCAGCACAAAACCCGTACATCGTTGTCTGTTACCAGATTTTCTATGACAATGGTGCCATTTTTTTCATCTTAGAATACATGGATGGTGGATCTCTTGCAGATCATCTTAAAAAAGTTAAAACGATCCTGGAGCCTTATCTTGCTTCAATTTGTTATCAGGTACTCAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATTCACAGAGACCTAAAACCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATAATGGCAAGTACATCTGGACAGGCAAATAGTTTTGTTGGCACATACACTTATATGTCTCCCGAGAGAATCGGTGGAGGCAAATATGACAACAAAAGTGATATATGGAGTTTGGGATTGGTGTTGCTAGAATGTGCAACAGGTCAATTTCCATATTCTCCACCAGACAAGGATAAAGGATGGGAAAGCTTTTTTGACCTTATGTCAGCTGTAGTAGATAGAGCGCCGCCTTCCGCCCCTGAACAATTTTCTCCAGAGTTTTGCTCATTCATTTCTTCATGCTTACAGAAAGATCCAACTCGCCGGCTCTCTGCACGCCAACTTTTGGTGCATCCTTTTATCAAAAAGTTCGAACAGCTGGATGTCGATCTCCCAGCTTACTTTAGAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1080 39.35 MPLMKKDSSMNSNLSLILPPPDEVSFVKFITKSGTFTDGDLLVNRDGVRIVSQNEDEIPPPIKPSDSDNHLSLVDLDTIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNGEESHCRMIAQELKINQSAQNPYIVVCYQIFYDNGAIFFILEYMDGGSLADHLKKVKTILEPYLASICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGQANSFVGTYTYMSPERIGGGKYDNKSDIWSLGLVLLECATGQFPYSPPDKDKGWESFFDLMSAVVDRAPPSAPEQFSPEFCSFISSCLQKDPTRRLSARQLLVHPFIKKFEQLDVDLPAYFRDAGSPLATF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4434408 4437931 - evm.model.ptg000016l.611 HCH10g0549 552622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0549 359 Pfam Protein kinase domain 78 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0549 359 Gene3D Phosphorylase Kinase; domain 1 47 155 - -
HCH10g0549 359 SMART serkin_6 76 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0549 359 SUPERFAMILY Protein kinase-like (PK-like) 77 343 IPR011009 -
HCH10g0549 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0549 359 FunFam Mitogen-activated protein kinase kinase 1 58 155 - -
HCH10g0549 359 ProSiteProfiles Protein kinase domain profile. 76 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0549 359 CDD PKc_MAPKK_plant_like 75 340 - -
HCH10g0549 359 Gene3D Transferase(Phosphotransferase) domain 1 156 354 - -
HCH10g0549 359 FunFam Mitogen-activated protein kinase kinase 6 157 354 - -
HCH10g0549 359 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524(InterPro)
HCH10g0549 359 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 32 355 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0549 K20603 - - csv:101206374 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0549 HCH-Chr10:4434408 HCH9g0122 HCH-Chr9:669002 4.30E-60 dispersed
HCH3g0225 HCH-Chr3:1436069 HCH10g0549 HCH-Chr10:4434408 2.90E-60 transposed
HCH10g0549 HCH-Chr10:4434408 HCH8g0625 HCH-Chr8:43046641 5.80E-150 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0625 . 17 352 MAP Kinase Kinase Gene Family AT4G26070 67.4 4.7e-133 471.1
HCH10g0549 . 31 357 MAP Kinase Kinase Gene Family AT4G26070 66.8 4.7e-125 444.5
HCH10g0504 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 6.8e-108 387.5
HCH8g0625 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 68.9 1.4e-134 476.1
HCH10g0549 . 6 331 MAP Kinase Kinase Gene Family AT4G29810 64.6 3.1e-121 431.8
HCH10g0504 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.5 3.0e-108 388.7
HCH9g0122 . 36 519 MAP Kinase Kinase Gene Family AT5G40440 79.3 1.3e-227 785.8
HCH6g0026 . 82 371 MAP Kinase Kinase Gene Family AT1G51660 74.1 1.2e-123 439.9
HCH6g0026 . 80 367 MAP Kinase Kinase Gene Family AT3G21220 72.9 2.6e-123 438.7
HCH3g0225 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 55.4 6.3e-85 311.2
HCH10g0504 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.1 8.0e-168 586.6
HCH8g0625 . 10 351 MAP Kinase Kinase Gene Family AT5G56580 59.8 4.2e-116 414.8
HCH10g0549 . 20 345 MAP Kinase Kinase Gene Family AT5G56580 59.5 7.6e-110 394.0
HCH3g0225 . 1 309 MAP Kinase Kinase Gene Family AT1G18350 61.9 5.8e-106 380.9
HCH6g0026 . 80 342 MAP Kinase Kinase Gene Family AT1G18350 52.6 1.9e-77 286.2
HCH3g0225 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.3 2.3e-80 295.8
HCH3g0225 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.8 1.3e-113 406.4
HCH6g0026 . 83 339 MAP Kinase Kinase Gene Family AT1G73500 53.8 3.6e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80990 PF00069 Pkinase 1.40E-70 CL0016 HCH PK