Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0549 ATGCCATTAATGAAGAAAGATAGTTCCATGAATTCTAATCTGAGTCTTATTCTCCCTCCTCCTGACGAAGTTTCTTTCGTCAAATTCATAACTAAAAGCGGTACTTTTACTGATGGCGATTTGCTCGTTAATAGAGACGGAGTGAGGATTGTTTCTCAGAATGAGGATGAAATTCCTCCACCAATTAAGCCTTCAGATTCAGACAACCATCTGTCTTTAGTAGATTTGGATACAATTAAAGTCATTGGGAAAGGAAATGGTGGAATTGTCCAATTAGTGAGACATAAATGGACTAACCAGTTTTTTGCACTAAAGGTAATTCAGATGAACGGTGAGGAATCTCATTGTAGAATGATTGCACAGGAACTAAAAATTAATCAGTCAGCACAAAACCCGTACATCGTTGTCTGTTACCAGATTTTCTATGACAATGGTGCCATTTTTTTCATCTTAGAATACATGGATGGTGGATCTCTTGCAGATCATCTTAAAAAAGTTAAAACGATCCTGGAGCCTTATCTTGCTTCAATTTGTTATCAGGTACTCAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATTCACAGAGACCTAAAACCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATAATGGCAAGTACATCTGGACAGGCAAATAGTTTTGTTGGCACATACACTTATATGTCTCCCGAGAGAATCGGTGGAGGCAAATATGACAACAAAAGTGATATATGGAGTTTGGGATTGGTGTTGCTAGAATGTGCAACAGGTCAATTTCCATATTCTCCACCAGACAAGGATAAAGGATGGGAAAGCTTTTTTGACCTTATGTCAGCTGTAGTAGATAGAGCGCCGCCTTCCGCCCCTGAACAATTTTCTCCAGAGTTTTGCTCATTCATTTCTTCATGCTTACAGAAAGATCCAACTCGCCGGCTCTCTGCACGCCAACTTTTGGTGCATCCTTTTATCAAAAAGTTCGAACAGCTGGATGTCGATCTCCCAGCTTACTTTAGAGATGCTGGCTCTCCATTGGCAACCTTCTAA 1080 39.35 MPLMKKDSSMNSNLSLILPPPDEVSFVKFITKSGTFTDGDLLVNRDGVRIVSQNEDEIPPPIKPSDSDNHLSLVDLDTIKVIGKGNGGIVQLVRHKWTNQFFALKVIQMNGEESHCRMIAQELKINQSAQNPYIVVCYQIFYDNGAIFFILEYMDGGSLADHLKKVKTILEPYLASICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAIMASTSGQANSFVGTYTYMSPERIGGGKYDNKSDIWSLGLVLLECATGQFPYSPPDKDKGWESFFDLMSAVVDRAPPSAPEQFSPEFCSFISSCLQKDPTRRLSARQLLVHPFIKKFEQLDVDLPAYFRDAGSPLATF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4434408 4437931 - evm.model.ptg000016l.611 HCH10g0549 552622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0549 359 Pfam Protein kinase domain 78 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0549 359 Gene3D Phosphorylase Kinase; domain 1 47 155 - -
HCH10g0549 359 SMART serkin_6 76 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0549 359 SUPERFAMILY Protein kinase-like (PK-like) 77 343 IPR011009 -
HCH10g0549 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0549 359 FunFam Mitogen-activated protein kinase kinase 1 58 155 - -
HCH10g0549 359 ProSiteProfiles Protein kinase domain profile. 76 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0549 359 CDD PKc_MAPKK_plant_like 75 340 - -
HCH10g0549 359 Gene3D Transferase(Phosphotransferase) domain 1 156 354 - -
HCH10g0549 359 FunFam Mitogen-activated protein kinase kinase 6 157 354 - -
HCH10g0549 359 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524(InterPro)
HCH10g0549 359 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 32 355 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0549 HCH-Chr10:4434408 HCH9g0122 HCH-Chr9:669002 4.30E-60 dispersed
HCH3g0225 HCH-Chr3:1436069 HCH10g0549 HCH-Chr10:4434408 2.90E-60 transposed
HCH10g0549 HCH-Chr10:4434408 HCH8g0625 HCH-Chr8:43046641 5.80E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80990 PF00069 Pkinase 1.40E-70 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0549 K20603 - csv:101206374 621.313