Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0555 ATGGATTCTGGGTTTCAAAAAAACATGGATGGAGGAGCAGCTTATAATCCTCGTACTGTCGAAGAAGTTTTCAGGGACTTTAAGGGTCGTCGTGCTGGAATGATTAAAGCTCTCACTACTGATGTTGAAGAATTTTATCAGCAGTGTGATCCTGAGAAGGAAAACCTTTGCCTATATGGATTCCCTAATGAACAATGGGAAGTCAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCTCTTGTTGCTGTTCATAGTGATGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTGCCAGATTTGGTTTTGATAAATCTGATAGGAAACGCCTTTTCTCTATGGTAAACGAGTTACCCTCGATATTTGAGGTTGTGACTGGAAATGTGAAGAAACAGGGCAAAGAGAAGTCATTAGTCTCAAATAACAGCAGCAACAAATCCAAGATGGGCTCAAAAGGGCGAGGCTCTGAATCGAGCAAATATGCCAAGGGCGCGGTGCCACTGCCAAAGGATGATGAAGAAGTACTGGATGAGGAAGACGAAGAGGAACATGGGGAGACCTTATGTGGGTCGTGTGGCGAGAATTATGCATCAGACGAGTTCTGGATCTGTTGCGACATATGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCCTCATGCAGCAATAAAAGAGCGCGGCCCTGA 789 44.74 MDSGFQKNMDGGAAYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFSMVNELPSIFEVVTGNVKKQGKEKSLVSNNSSNKSKMGSKGRGSESSKYAKGAVPLPKDDEEVLDEEDEEEHGETLCGSCGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4467845 4469817 - evm.model.ptg000016l.605 HCH10g0555 552628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0555 262 SMART PHD_3 208 256 IPR001965 -
HCH10g0555 262 FunFam PHD finger alfin-like protein 201 257 - -
HCH10g0555 262 PANTHER CPG BINDING PROTEIN 15 261 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
HCH10g0555 262 SUPERFAMILY FYVE/PHD zinc finger 198 259 IPR011011 -
HCH10g0555 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 257 IPR013083 -
HCH10g0555 262 CDD PHD_AL_plant 208 258 IPR044104 -
HCH10g0555 262 ProSiteProfiles Zinc finger PHD-type profile. 206 258 IPR019787 -
HCH10g0555 262 MobiDBLite consensus disorder prediction 153 200 - -
HCH10g0555 262 ProSitePatterns Zinc finger PHD-type signature. 209 255 IPR019786 -
HCH10g0555 262 Pfam PHD-finger 209 255 IPR019787 -
HCH10g0555 262 MobiDBLite consensus disorder prediction 153 174 - -
HCH10g0555 262 Pfam Alfin 19 146 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0555 K26274 - - rcu:8272513 442.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0555 HCH-Chr10:4467845 HCH1g0364 HCH-Chr1:50779798 7.90E-88 dispersed
HCH11g0791 HCH-Chr11:38197646 HCH10g0555 HCH-Chr10:4467845 5.10E-100 transposed
HCH10g0555 HCH-Chr10:4467845 HCH4g1501 HCH-Chr4:11420387 1.60E-104 wgd
HCH10g0555 HCH-Chr10:4467845 HCH4g0514 HCH-Chr4:3390936 3.20E-121 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH11g0791 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.5 2.1e-114 408.7
HCH10g0555 . 17 259 Alfin-like Transcription Factor Family AT1G14510 69.1 1.7e-95 345.9
HCH4g0514 . 9 254 Alfin-like Transcription Factor Family AT1G14510 68.7 2.4e-94 342.0
HCH4g1501 . 10 255 Alfin-like Transcription Factor Family AT1G14510 63.0 2.9e-87 318.5
HCH1g0364 . 8 235 Alfin-like Transcription Factor Family AT1G14510 61.3 3.8e-79 291.6
HCH11g0087 . 7 236 Alfin-like Transcription Factor Family AT1G14510 59.6 3.2e-78 288.5
HCH10g0555 . 9 261 Alfin-like Transcription Factor Family AT5G26210 74.3 7.1e-110 393.7
HCH4g0514 . 1 257 Alfin-like Transcription Factor Family AT5G26210 72.8 3.9e-108 387.9
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT5G26210 74.9 1.9e-94 342.4
HCH4g1501 . 5 255 Alfin-like Transcription Factor Family AT5G26210 64.7 4.2e-94 341.3
HCH1g0364 . 7 240 Alfin-like Transcription Factor Family AT5G26210 59.9 1.3e-82 303.1
HCH11g0087 . 4 238 Alfin-like Transcription Factor Family AT5G26210 57.8 1.6e-80 296.2
HCH4g0514 . 1 257 Alfin-like Transcription Factor Family AT3G42790 68.6 7.8e-101 363.6
HCH10g0555 . 9 261 Alfin-like Transcription Factor Family AT3G42790 68.5 1.5e-99 359.4
HCH4g1501 . 1 255 Alfin-like Transcription Factor Family AT3G42790 63.1 4.3e-91 331.3
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 1.6e-90 329.3
HCH1g0364 . 7 240 Alfin-like Transcription Factor Family AT3G42790 61.1 4.7e-82 301.2
HCH11g0087 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.8 7.1e-78 287.3
HCH1g0364 . 1 241 Alfin-like Transcription Factor Family AT5G05610 80.2 2.0e-114 408.7
HCH11g0087 . 4 239 Alfin-like Transcription Factor Family AT5G05610 75.1 1.0e-105 379.8
HCH4g0514 . 8 256 Alfin-like Transcription Factor Family AT5G05610 65.2 4.9e-92 334.3
HCH10g0555 . 16 261 Alfin-like Transcription Factor Family AT5G05610 63.6 4.5e-90 327.8
HCH4g1501 . 9 252 Alfin-like Transcription Factor Family AT5G05610 63.5 5.9e-90 327.4
HCH11g0791 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 2.4e-83 305.4
HCH1g0364 . 43 241 Alfin-like Transcription Factor Family AT3G11200 82.2 2.4e-96 348.6
HCH11g0087 . 42 239 Alfin-like Transcription Factor Family AT3G11200 74.3 3.3e-85 311.6
HCH4g0514 . 44 256 Alfin-like Transcription Factor Family AT3G11200 63.7 4.0e-75 278.1
HCH10g0555 . 52 261 Alfin-like Transcription Factor Family AT3G11200 63.7 2.2e-73 272.3
HCH4g1501 . 45 248 Alfin-like Transcription Factor Family AT3G11200 61.7 2.3e-70 262.3
HCH11g0791 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 1.2e-68 256.5
HCH11g0791 . 1 161 Alfin-like Transcription Factor Family AT2G02470 87.0 4.2e-78 288.1
HCH10g0555 . 9 166 Alfin-like Transcription Factor Family AT2G02470 76.6 2.8e-66 248.8
HCH4g0514 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 2.0e-64 242.7
HCH4g1501 . 10 144 Alfin-like Transcription Factor Family AT2G02470 78.5 6.8e-60 227.6
HCH1g0364 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 5.6e-54 208.0
HCH11g0087 . 7 154 Alfin-like Transcription Factor Family AT2G02470 66.2 2.1e-53 206.1
HCH4g0514 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.6 4.7e-74 274.2
HCH10g0555 . 9 172 Alfin-like Transcription Factor Family AT5G20510 78.2 3.1e-73 271.6
HCH4g1501 . 1 164 Alfin-like Transcription Factor Family AT5G20510 73.3 4.3e-67 251.1
HCH11g0791 . 3 172 Alfin-like Transcription Factor Family AT5G20510 69.8 5.2e-65 244.2
HCH1g0364 . 7 157 Alfin-like Transcription Factor Family AT5G20510 64.3 9.2e-54 206.8
HCH11g0087 . 6 163 Alfin-like Transcription Factor Family AT5G20510 60.0 6.6e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32447 PF12165 Alfin 1.50E-69 No_clan HCH TF