Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0555 | ATGGATTCTGGGTTTCAAAAAAACATGGATGGAGGAGCAGCTTATAATCCTCGTACTGTCGAAGAAGTTTTCAGGGACTTTAAGGGTCGTCGTGCTGGAATGATTAAAGCTCTCACTACTGATGTTGAAGAATTTTATCAGCAGTGTGATCCTGAGAAGGAAAACCTTTGCCTATATGGATTCCCTAATGAACAATGGGAAGTCAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCTCTTGTTGCTGTTCATAGTGATGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTGCCAGATTTGGTTTTGATAAATCTGATAGGAAACGCCTTTTCTCTATGGTAAACGAGTTACCCTCGATATTTGAGGTTGTGACTGGAAATGTGAAGAAACAGGGCAAAGAGAAGTCATTAGTCTCAAATAACAGCAGCAACAAATCCAAGATGGGCTCAAAAGGGCGAGGCTCTGAATCGAGCAAATATGCCAAGGGCGCGGTGCCACTGCCAAAGGATGATGAAGAAGTACTGGATGAGGAAGACGAAGAGGAACATGGGGAGACCTTATGTGGGTCGTGTGGCGAGAATTATGCATCAGACGAGTTCTGGATCTGTTGCGACATATGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCCTCATGCAGCAATAAAAGAGCGCGGCCCTGA | 789 | 44.74 | MDSGFQKNMDGGAAYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFSMVNELPSIFEVVTGNVKKQGKEKSLVSNNSSNKSKMGSKGRGSESSKYAKGAVPLPKDDEEVLDEEDEEEHGETLCGSCGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4467845 | 4469817 | - | evm.model.ptg000016l.605 | HCH10g0555 | 552628 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0555 | 262 | SMART | PHD_3 | 208 | 256 | IPR001965 | - | |
HCH10g0555 | 262 | FunFam | PHD finger alfin-like protein | 201 | 257 | - | - | |
HCH10g0555 | 262 | PANTHER | CPG BINDING PROTEIN | 15 | 261 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
HCH10g0555 | 262 | SUPERFAMILY | FYVE/PHD zinc finger | 198 | 259 | IPR011011 | - | |
HCH10g0555 | 262 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 257 | IPR013083 | - | |
HCH10g0555 | 262 | CDD | PHD_AL_plant | 208 | 258 | IPR044104 | - | |
HCH10g0555 | 262 | ProSiteProfiles | Zinc finger PHD-type profile. | 206 | 258 | IPR019787 | - | |
HCH10g0555 | 262 | MobiDBLite | consensus disorder prediction | 153 | 200 | - | - | |
HCH10g0555 | 262 | ProSitePatterns | Zinc finger PHD-type signature. | 209 | 255 | IPR019786 | - | |
HCH10g0555 | 262 | Pfam | PHD-finger | 209 | 255 | IPR019787 | - | |
HCH10g0555 | 262 | MobiDBLite | consensus disorder prediction | 153 | 174 | - | - | |
HCH10g0555 | 262 | Pfam | Alfin | 19 | 146 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0555 | HCH-Chr10:4467845 | HCH1g0364 | HCH-Chr1:50779798 | 7.90E-88 | dispersed | |
HCH11g0791 | HCH-Chr11:38197646 | HCH10g0555 | HCH-Chr10:4467845 | 5.10E-100 | transposed | |
HCH10g0555 | HCH-Chr10:4467845 | HCH4g1501 | HCH-Chr4:11420387 | 1.60E-104 | wgd | |
HCH10g0555 | HCH-Chr10:4467845 | HCH4g0514 | HCH-Chr4:3390936 | 3.20E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32447 | PF12165 | Alfin | 1.50E-69 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0555 | K26274 | - | rcu:8272513 | 442.58 |