Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0555 ATGGATTCTGGGTTTCAAAAAAACATGGATGGAGGAGCAGCTTATAATCCTCGTACTGTCGAAGAAGTTTTCAGGGACTTTAAGGGTCGTCGTGCTGGAATGATTAAAGCTCTCACTACTGATGTTGAAGAATTTTATCAGCAGTGTGATCCTGAGAAGGAAAACCTTTGCCTATATGGATTCCCTAATGAACAATGGGAAGTCAATTTGCCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCTCTTGTTGCTGTTCATAGTGATGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTGCCAGATTTGGTTTTGATAAATCTGATAGGAAACGCCTTTTCTCTATGGTAAACGAGTTACCCTCGATATTTGAGGTTGTGACTGGAAATGTGAAGAAACAGGGCAAAGAGAAGTCATTAGTCTCAAATAACAGCAGCAACAAATCCAAGATGGGCTCAAAAGGGCGAGGCTCTGAATCGAGCAAATATGCCAAGGGCGCGGTGCCACTGCCAAAGGATGATGAAGAAGTACTGGATGAGGAAGACGAAGAGGAACATGGGGAGACCTTATGTGGGTCGTGTGGCGAGAATTATGCATCAGACGAGTTCTGGATCTGTTGCGACATATGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCCTCATGCAGCAATAAAAGAGCGCGGCCCTGA 789 44.74 MDSGFQKNMDGGAAYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFSMVNELPSIFEVVTGNVKKQGKEKSLVSNNSSNKSKMGSKGRGSESSKYAKGAVPLPKDDEEVLDEEDEEEHGETLCGSCGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4467845 4469817 - evm.model.ptg000016l.605 HCH10g0555 552628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0555 262 SMART PHD_3 208 256 IPR001965 -
HCH10g0555 262 FunFam PHD finger alfin-like protein 201 257 - -
HCH10g0555 262 PANTHER CPG BINDING PROTEIN 15 261 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
HCH10g0555 262 SUPERFAMILY FYVE/PHD zinc finger 198 259 IPR011011 -
HCH10g0555 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 257 IPR013083 -
HCH10g0555 262 CDD PHD_AL_plant 208 258 IPR044104 -
HCH10g0555 262 ProSiteProfiles Zinc finger PHD-type profile. 206 258 IPR019787 -
HCH10g0555 262 MobiDBLite consensus disorder prediction 153 200 - -
HCH10g0555 262 ProSitePatterns Zinc finger PHD-type signature. 209 255 IPR019786 -
HCH10g0555 262 Pfam PHD-finger 209 255 IPR019787 -
HCH10g0555 262 MobiDBLite consensus disorder prediction 153 174 - -
HCH10g0555 262 Pfam Alfin 19 146 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0555 HCH-Chr10:4467845 HCH1g0364 HCH-Chr1:50779798 7.90E-88 dispersed
HCH11g0791 HCH-Chr11:38197646 HCH10g0555 HCH-Chr10:4467845 5.10E-100 transposed
HCH10g0555 HCH-Chr10:4467845 HCH4g1501 HCH-Chr4:11420387 1.60E-104 wgd
HCH10g0555 HCH-Chr10:4467845 HCH4g0514 HCH-Chr4:3390936 3.20E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32447 PF12165 Alfin 1.50E-69 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0555 K26274 - rcu:8272513 442.58