Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0561 | ATGCCGATACATCTCACACCGAACGCAATCCAAGCGATTGTGGCCGGCGACGTTGATTCCAAGCCTCTAGTTCAAGTTTTAGATATCAAATTAGTCGGTAGTTCGCAGGAACGTTTCCGTCTTTTGATCTCTGATTCCGTTTCTACTGAAAGCGCTATGCTCGCTACTCAGCTTAATGACCTAATCAAGACTGGACGAATCAAAAAAGGATCTGTTATTCAGTTGATTGAGTATATTTGCAGTTTCGTCAAGGATCGCCGGATTATTGTAGTGCTTAACCTGGAAACTCTTCAACTGGAATCTGAGATAATTGGGAATCCAAAATTATCTGCTCAATCAGATTTTGCTCTAAAAGAGGCAATACCTTCTAGCAAGTTGGAGCAACCTTCCACGGTTGGCAATGGCCTTTTGAGTGTCCGAAGTCAAGTTCATAATGTGCCGAATTTCCAACCTACAGTTCAACCTCCATATCAACCACCTCCAAATTATAGAAATCATGGTACAATTATTAAGAATGACGCACCAGCACGTATTATTCCTATAGCTGCATTGAACCCTTATCAGGGGCGTTGGGCTATAAAGGCAAGAGTTACTGCAAAAGGTGATCTCCGTCGCTACAATAATGCCCGAGGAGATGGGAAAGTTTTCTCTTTTGACCTACTCGATTCTGATGGAGGAGAGATACGTGTTACCTGCTTCAATGCTGTTGTTGATCGCTTCTATGAGGTTATAGAGGTCGGTAAAGTCTACTTGATTTCTAAGGGTAGCCTAAAACCTGCTCAGAAGAATTTCAATCACCTGAAGAACGAATGGGAGGTTTTCTTGGAGGCAACTTCTACGGTGGAACTTTGCCCTGATGAAGATGGTTCAATACCAAGACAGCAGTTTTCGTTCAGACCTATTAGTGAAATTGAGAGTGCTGAAACCAATTCTATTATTGATATTATCGGTATTGTGACTTCTGTCAACCCTTCAATTCCTGTGTTGAGAAAAAATGGTATGGAAACTCAAAGGAGGGTTCTGAATTTAAAAGATGCATCTTCCAGGAGTGTTGAGCTAACCTTATGGGGGGATTTTTGCAACAAAGAAGGTCAACAATTGCAAGACATGGTCAACTCGGGGCTTTCTCCAGTTCTAGCTGTGAAATCCGGGAAGGTTAGTGATTTCACTGGGAAATCCATTGGAACAATTTCTTCCACTCAGCTTTTCATAAATCCAGATTTTTCTGAGGCTCGCATCTTGAGAGACTGGTATGATGGTGGAGGGAAGAATACTTCTTCTCTATCTATTTCTAAAGAAATTATGACAGGAACAGCCAAAAACGAGATCCGGAAGGCTGTGTCTCAGATTAAAGACGAAGGTCTTGGAAGATCTGATAAGCCAGATTGGATTACTGTGAAAGCAACCATATCTTTCATCAAAACAGATTCTTTCTGCTACACAGCATGCCCCCTGATGATCGGAGATCGACAGTGCAATAAGAAGGTGACGAGATCAGGAAGTTCAAAATGGCAATGTGACAGGTGCAATCAAGAATTCGAGGAGTGCGATTATAGATATCTTCTTCAAGCCCAAATCCAAGACCATACCGGATTGACATGGGTGACAGCCTTTCAGGAATCTGGTGAAGAGATTTTGGGCATACCAGCCAAAGATTTATACTTGTTGAAGTATGAAGAGCAGGACGACACCAAGTTTGGTGAAATAATCAGGAGTAAAATTTTCGATCAATTTCTATTCAGACTCAAAATTAAAGAGGAAATGTATGGGGATGAGCAGAGGGTGAAAAATACTGTTGTCAAGGCAGATAGGGTAAACTATTCTTCTGAAAGCAGATACATGTTAGATTTGCTTTCAAAATTTTCGAGGAGCCGCATATTACACGCAAGACACATAAACAACCACTACAGACAATGGAACCAGGAAAAGGCATCATGA | 1938 | 41.43 | MPIHLTPNAIQAIVAGDVDSKPLVQVLDIKLVGSSQERFRLLISDSVSTESAMLATQLNDLIKTGRIKKGSVIQLIEYICSFVKDRRIIVVLNLETLQLESEIIGNPKLSAQSDFALKEAIPSSKLEQPSTVGNGLLSVRSQVHNVPNFQPTVQPPYQPPPNYRNHGTIIKNDAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPAQKNFNHLKNEWEVFLEATSTVELCPDEDGSIPRQQFSFRPISEIESAETNSIIDIIGIVTSVNPSIPVLRKNGMETQRRVLNLKDASSRSVELTLWGDFCNKEGQQLQDMVNSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDFSEARILRDWYDGGGKNTSSLSISKEIMTGTAKNEIRKAVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGSSKWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQESGEEILGIPAKDLYLLKYEEQDDTKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYSSESRYMLDLLSKFSRSRILHARHINNHYRQWNQEKAS | 645 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 4515829 | 4518844 | - | evm.model.ptg000016l.599 | HCH10g0561 | 552634 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0561 | 645 | Gene3D | - | 290 | 430 | IPR012340 | - | |
| HCH10g0561 | 645 | FunFam | Replication protein A subunit | 177 | 286 | - | - | |
| HCH10g0561 | 645 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 106 | IPR012340 | - | |
| HCH10g0561 | 645 | SUPERFAMILY | Nucleic acid-binding proteins | 177 | 290 | IPR012340 | - | |
| HCH10g0561 | 645 | CDD | RPA1N | 9 | 98 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| HCH10g0561 | 645 | CDD | RPA1_DBD_C | 447 | 620 | IPR047192 | - | |
| HCH10g0561 | 645 | Pfam | Replication factor-A protein 1, N-terminal domain | 5 | 98 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| HCH10g0561 | 645 | CDD | RPA1_DBD_B | 312 | 419 | - | - | |
| HCH10g0561 | 645 | Pfam | OB-fold nucleic acid binding domain | 193 | 263 | IPR004365 | GO:0003676(InterPro) | |
| HCH10g0561 | 645 | NCBIfam | replication factor-a protein 1 (rpa1) | 5 | 620 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| HCH10g0561 | 645 | FunFam | Replication protein A subunit | 290 | 428 | - | - | |
| HCH10g0561 | 645 | SUPERFAMILY | Nucleic acid-binding proteins | 295 | 425 | IPR012340 | - | |
| HCH10g0561 | 645 | CDD | RPA1_DBD_A | 180 | 283 | - | - | |
| HCH10g0561 | 645 | FunFam | Replication protein A subunit | 4 | 111 | - | - | |
| HCH10g0561 | 645 | Gene3D | - | 177 | 287 | IPR012340 | - | |
| HCH10g0561 | 645 | Gene3D | - | 3 | 110 | IPR012340 | - | |
| HCH10g0561 | 645 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 179 | 600 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| HCH10g0561 | 645 | Gene3D | - | 431 | 622 | IPR012340 | - | |
| HCH10g0561 | 645 | Pfam | Replication protein A OB domain | 301 | 405 | IPR031657 | - | |
| HCH10g0561 | 645 | FunFam | Replication protein A subunit | 429 | 621 | - | - | |
| HCH10g0561 | 645 | Pfam | Replication factor-A C terminal domain | 463 | 614 | IPR013955 | - | |
| HCH10g0561 | 645 | SUPERFAMILY | Nucleic acid-binding proteins | 444 | 621 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0561 | HCH-Chr10:4515829 | HCH6g1164 | HCH-Chr6:46151274 | 1.90E-212 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0561 | K07466 | - | csv:101207583 | 1079.32 |