Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0567 ATGAGTGGAAGAAACAAGTTTCCTTTCACTGCAGCTCAATGGCAAGAGCTGGAACATCAAGCTCTTATTTTCAAGTATATGGTCTCAGGCATCCCTGTCCCTCCTGATCTACTCTTTAACATCAAAAGAACCTGCTTGGATTCTCCTTTCATTTCAAGGCTCCTTCCTCAGCAATATCAAGATGTTGGATGGAACTATTTGCAGATGAGTTCTGGTAGGAAAATAGATCCTGAGCCTGGAAGATGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAGAGACATATGCATAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAAGTTCTGAAAACAACAGCTTTGAACTCAAATCCATCAACTCCAGCCATCTCATCCATTACTCAAAACTCCACTTTTTCCTCATCTTCTTCTCATTCCCTTGCTTCTCTTAGCAATGAAAATCATAATCAACAGCCCCAATTTCACCATTCTTGCCTCAATACTCATACGAGCCCGCACCCTTTTCTCTATCAACAACATGGATCTTCTTCAAGGCCTCTTGGTTCTGGTAATCTGCAGCAAAATACCAGTACACCCTTGATGTTTGATTCCAGTTCTTACTCACATAACAGCCCAGATTACAGAAGGAATAGGTATGTTTATGGACTGAAGGAAGATGTTGATGAACATCCCTTTCTTTCTGAAGAACATTCTGGGACTATGAGAGGGTTTTCTGGTTCTTCCATGGAAGATTCCTGGCAGCTAACACCTTTGACAATGAGTTGTTCTCCCTCATCTTCAAGGCAGAAGAACTGTTCTGCTTTACAAGGTGATTACTCTTCTTACTTGCAGCTTCAGAGTTTCAGTGATTCTCCAAAACAATTACTTAAGCAAGATGAAAATTACTATGCATTGAGTAAATATGAGATGCACCAAAAGATGGATAGAGAAGAACCACAGAAGACAATGCACCACTTCTTTGATGAATGGTCTCCAAAAGAAAGAGAGTCATGGCTTGATTTGGATGATAAATCATCAAACACTGGTTCTGTTTCTGCTACCAGGCTTTCAATGTCCATTCCCAACTCATCCCATCATGACTTTTCCATCTTTAGTTCCAATAAGCATAATGATAATTGA 1155 40.26 MSGRNKFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLFNIKRTCLDSPFISRLLPQQYQDVGWNYLQMSSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTALNSNPSTPAISSITQNSTFSSSSSHSLASLSNENHNQQPQFHHSCLNTHTSPHPFLYQQHGSSSRPLGSGNLQQNTSTPLMFDSSSYSHNSPDYRRNRYVYGLKEDVDEHPFLSEEHSGTMRGFSGSSMEDSWQLTPLTMSCSPSSSRQKNCSALQGDYSSYLQLQSFSDSPKQLLKQDENYYALSKYEMHQKMDREEPQKTMHHFFDEWSPKERESWLDLDDKSSNTGSVSATRLSMSIPNSSHHDFSIFSSNKHNDN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4552305 4553864 - evm.model.ptg000016l.593 HCH10g0567 552640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0567 384 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH10g0567 384 MobiDBLite consensus disorder prediction 343 384 - -
HCH10g0567 384 Pfam WRC 77 119 IPR014977 -
HCH10g0567 384 PANTHER GROWTH-REGULATING FACTOR 5 2 369 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
HCH10g0567 384 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH10g0567 384 MobiDBLite consensus disorder prediction 125 219 - -
HCH10g0567 384 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH10g0567 384 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
HCH10g0567 384 MobiDBLite consensus disorder prediction 125 218 - -
HCH10g0567 384 MobiDBLite consensus disorder prediction 348 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0567 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0567 HCH-Chr10:4552305 HCH6g0073 HCH-Chr6:898326 2.00E-55 dispersed
HCH10g0567 HCH-Chr10:4552305 HCH8g0609 HCH-Chr8:42904353 4.70E-105 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0609 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 9.0e-43 171.4
HCH10g0567 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 9.9e-42 167.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002565 3 3 1 2 3 1 4 1 1 1 2 1 4 1 2 3 1 1 3 1 2 2 2 2 2 1 2 3 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32449 PF08879 WRC 8.20E-21 No_clan HCH TF