Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0567 ATGAGTGGAAGAAACAAGTTTCCTTTCACTGCAGCTCAATGGCAAGAGCTGGAACATCAAGCTCTTATTTTCAAGTATATGGTCTCAGGCATCCCTGTCCCTCCTGATCTACTCTTTAACATCAAAAGAACCTGCTTGGATTCTCCTTTCATTTCAAGGCTCCTTCCTCAGCAATATCAAGATGTTGGATGGAACTATTTGCAGATGAGTTCTGGTAGGAAAATAGATCCTGAGCCTGGAAGATGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAGAGACATATGCATAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAAGTTCTGAAAACAACAGCTTTGAACTCAAATCCATCAACTCCAGCCATCTCATCCATTACTCAAAACTCCACTTTTTCCTCATCTTCTTCTCATTCCCTTGCTTCTCTTAGCAATGAAAATCATAATCAACAGCCCCAATTTCACCATTCTTGCCTCAATACTCATACGAGCCCGCACCCTTTTCTCTATCAACAACATGGATCTTCTTCAAGGCCTCTTGGTTCTGGTAATCTGCAGCAAAATACCAGTACACCCTTGATGTTTGATTCCAGTTCTTACTCACATAACAGCCCAGATTACAGAAGGAATAGGTATGTTTATGGACTGAAGGAAGATGTTGATGAACATCCCTTTCTTTCTGAAGAACATTCTGGGACTATGAGAGGGTTTTCTGGTTCTTCCATGGAAGATTCCTGGCAGCTAACACCTTTGACAATGAGTTGTTCTCCCTCATCTTCAAGGCAGAAGAACTGTTCTGCTTTACAAGGTGATTACTCTTCTTACTTGCAGCTTCAGAGTTTCAGTGATTCTCCAAAACAATTACTTAAGCAAGATGAAAATTACTATGCATTGAGTAAATATGAGATGCACCAAAAGATGGATAGAGAAGAACCACAGAAGACAATGCACCACTTCTTTGATGAATGGTCTCCAAAAGAAAGAGAGTCATGGCTTGATTTGGATGATAAATCATCAAACACTGGTTCTGTTTCTGCTACCAGGCTTTCAATGTCCATTCCCAACTCATCCCATCATGACTTTTCCATCTTTAGTTCCAATAAGCATAATGATAATTGA 1155 40.26 MSGRNKFPFTAAQWQELEHQALIFKYMVSGIPVPPDLLFNIKRTCLDSPFISRLLPQQYQDVGWNYLQMSSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTALNSNPSTPAISSITQNSTFSSSSSHSLASLSNENHNQQPQFHHSCLNTHTSPHPFLYQQHGSSSRPLGSGNLQQNTSTPLMFDSSSYSHNSPDYRRNRYVYGLKEDVDEHPFLSEEHSGTMRGFSGSSMEDSWQLTPLTMSCSPSSSRQKNCSALQGDYSSYLQLQSFSDSPKQLLKQDENYYALSKYEMHQKMDREEPQKTMHHFFDEWSPKERESWLDLDDKSSNTGSVSATRLSMSIPNSSHHDFSIFSSNKHNDN 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4552305 4553864 - evm.model.ptg000016l.593 HCH10g0567 552640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0567 384 SMART QLQ_2 7 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH10g0567 384 MobiDBLite consensus disorder prediction 343 384 - -
HCH10g0567 384 Pfam WRC 77 119 IPR014977 -
HCH10g0567 384 PANTHER GROWTH-REGULATING FACTOR 5 2 369 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
HCH10g0567 384 Pfam QLQ 8 41 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH10g0567 384 MobiDBLite consensus disorder prediction 125 219 - -
HCH10g0567 384 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH10g0567 384 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
HCH10g0567 384 MobiDBLite consensus disorder prediction 125 218 - -
HCH10g0567 384 MobiDBLite consensus disorder prediction 348 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0567 HCH-Chr10:4552305 HCH6g0073 HCH-Chr6:898326 2.00E-55 dispersed
HCH10g0567 HCH-Chr10:4552305 HCH8g0609 HCH-Chr8:42904353 4.70E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32449 PF08879 WRC 8.20E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0567 - - - 0.0