Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0571 ATGGCAGTGAAAAAAATGAAATGGAGATCCATTTTCTCAAGCTGCTGCGAAGTGGAATCTCACTCAGATTTGAAGAAAGTGGTATCAGCAGAAGCAGAACCCAGTTCATTTCAAAGATTATCTAAGCTTGATTTAAGCAACCCCATCTCCACTTTATCTGAAGATCTCTCCATCTCTCTCGCTGGATCTGATATCCATGCTTTTACTCTCGCTGAGCTCAAGCTTATTTCACAGAGCTTTTCTTCCTCTAACTTTCTTGGAGAAGGTGGTTTTGGACCTGTCTATAAGGGCTTCGTCGACGATAATCTTCGTCCCGGATTGATCGCGCAGCCGGTCGCTATAAAACTCCTGGATTTGGATGGCACTCAAGGGCACAGGGAGTGGCTGACGGAAGTGATTTTTTTAGGGCAGTTGAAACATGGGCACCTTGTGAAGTTGATTGGTTATTGTTGTGAAGATGAGCATAGGCTACTTGTTTATGAGTATATGCCTAGAGGAAGCTTGGAGACTCAGCTTTTCAAAAAATATTCGATTCCGTTGCCGTGGTCGACGAGGATGAAGATTGCTTTCGGAGCGGCGAAGGGACTCGCTTTCCTCCACGGTGCCAAAAACCGGGTTATATACCGCGATTTCAAAGCTTCAAACATACTTCTAGACTCTGATTATACGGCGAAACTCTCCGATTTCGGCTTAGCGAAAGACGGTCCGGAGGGGGACAACACACATGTCTCCACACGAGTTATGGGCACTCATGGATACGCCGCGCCCGAATATATAATGACTGGGCATTTGACGGCCATGAGCGATGTATATAGCTTCGGAGTCGTGCTTCTAGAGCTTATAACGGGACGGCGGTCGGTAGAAAAAAGCAGCCGCCGTCACCGACAGCAAAACTTAGCGGAATGGGCTCGGCCATTGCTGAACGATTCAAGGAAGCTCAGCCGTATAGTAGACCCGAGACTCGAAGGCCAATACTCAGAAATCGGAGCTCAAAAAGCAGCGGCATTGGCGTATTTATGCTTGAGCCACCGCCCAAAGCAACGGCCGACGATGAGCACCGTCGTCAAGACGCTAGAGCCGTTAAAGGATTTCGATGATTTCTCCGCCGGAACGTTCGTTTACACCGTCGTATCGGAAAATGACCGGCAGAAGCAAGCGGCGGAGAAGTGCGAAGAAGCGAAGAAATCGCCGTGA 1194 48.49 MAVKKMKWRSIFSSCCEVESHSDLKKVVSAEAEPSSFQRLSKLDLSNPISTLSEDLSISLAGSDIHAFTLAELKLISQSFSSSNFLGEGGFGPVYKGFVDDNLRPGLIAQPVAIKLLDLDGTQGHREWLTEVIFLGQLKHGHLVKLIGYCCEDEHRLLVYEYMPRGSLETQLFKKYSIPLPWSTRMKIAFGAAKGLAFLHGAKNRVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGDNTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELITGRRSVEKSSRRHRQQNLAEWARPLLNDSRKLSRIVDPRLEGQYSEIGAQKAAALAYLCLSHRPKQRPTMSTVVKTLEPLKDFDDFSAGTFVYTVVSENDRQKQAAEKCEEAKKSP 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4586761 4588420 + evm.model.ptg000016l.589 HCH10g0571 552644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0571 397 FunFam Serine/threonine-protein kinase BIK1 48 162 - -
HCH10g0571 397 Gene3D Phosphorylase Kinase; domain 1 46 162 - -
HCH10g0571 397 Pfam Protein tyrosine and serine/threonine kinase 84 358 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0571 397 PANTHER OS01G0588500 PROTEIN-RELATED 56 362 IPR050823 -
HCH10g0571 397 Gene3D Transferase(Phosphotransferase) domain 1 163 373 - -
HCH10g0571 397 SUPERFAMILY Protein kinase-like (PK-like) 65 366 IPR011009 -
HCH10g0571 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0571 397 FunFam Probable serine/threonine-protein kinase PBL8 163 377 - -
HCH10g0571 397 CDD STKc_IRAK 86 361 - -
HCH10g0571 397 ProSiteProfiles Protein kinase domain profile. 80 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0571 HCH-Chr10:4586761 HCH11g0003 HCH-Chr11:604050 2.50E-122 dispersed
HCH6g1299 HCH-Chr6:47187652 HCH10g0571 HCH-Chr10:4586761 1.70E-124 transposed
HCH10g0571 HCH-Chr10:4586761 HCH4g1516 HCH-Chr4:11572474 7.60E-127 wgd
HCH10g0571 HCH-Chr10:4586761 HCH8g0598 HCH-Chr8:42773162 7.50E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80991 PF07714 PK_Tyr_Ser-Thr 2.00E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0571 - - - 0.0