Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0580 ATGGCCGCCGCTGTTCCTTCACTTCTTCTCTTCCTCTCCCTCTCCCTCTCCCTCTTCTTCCCTTTCGCCGTTCCGCTTTCTGAGAACCAAGCCCTTCTCAAGCTCAAGAAATCCTTCACCAACTCCGCTTCCTTGAGTTCGTGGAATGAGGATACTATCCCTTGCATTGCTCGCTGGACTGGCCTCATTTGCAATAGAGGCATCATCACTGGTCTTCATCTCTCCAGCCTCGGACTATCCGGCGATATCGACATCGAAGCTCTTCTCGAGCTTCGTGGCCTTCGTACTGTTAGTTTTGTTAACAATGACTTCTCTGGTCCCATTCCATCTTTCAACAAGATTGGTGTTCTTAAAGCTCTTTTACTCACCGGTAATAATTTCTCTGGAGAGATCCCGAATGATTTCTTTTCCTCGTTGACATCTTTGAAGAAAGTATGGTTGGCCGGAAACAAATTCTCAGGGAGAATCCCGGATTCCTTAGGAGAATTGGATCATCTTATTGAGCTTCATTTGGAAAGCAACCAATTCTCAGGACCTATACCTAATTTAAAACAAACAACAATATCATCATTGGATTTCTCCAACAATAATTTATCTGGAGAAATCCCTGCGAGTTTTTCGAAATACGACGGGAAATCATTCTTGGGAAATGGAGGGCTTTGTGGGAAACCATCTCCAATACCATGTGAGAAAAACAAAGAAGGAAGAAACCCTCCTTCTTCTTCCCCTTCTCCTCCGGGTGAAACCCCCGCGAATGTAACGAAATTCTTAGGCGGGTCGTTAGTCGCGGTGGTGATATTCATTATGTTCTTTCTCATCTTCGGTTCATCGAAACGTAGAGACGACGATTTCGACGTGTTGATGAGGGAGCCAATGGAAGAAGTAGTGGAAGTGCATGTACCTAATAATTCACAAGACAAGTCTTCAAACAAGGATCAATCAAGTAGGAAAGGAGGTGGTGGAGGAGATTCAAAGAGAGGAGGATCACAGCATGGGAAGACAGGAATGAGTGATCTTGTGATAGTGAATGAAGAAAAAGGTGGCTTTGGATTGGCAGATTTGATGAAGGCAGCAGCAGAAGTGTTGGGAAATGGAGGACTGGGATCTGCTTATAAGGCAGTGATGTCAAATGGGTTATCAGTGGTGGTGAAGAGAATGAGGGAAATGAATAGAATAGGGAAAGATGGGTTTGATGCTGAAATGAGAAGGCTTGGGAGATTGAAACATCAGAATGTTTTGACACCATTGGCTTATCATTATAGGAGAGAGGAGAAGCTTTTGGTTTCTGAGTATATTCCTAAAGGAAGCTTGTTATATGTCTTGCATGGCGATCGTGGAGTTTGCCATGCAGAACTAAACTGGTCAATCCGATTAAAGATAGTACAAGGAATCGCACGTGGAATGGGTTTCCTCCACTCCGAATTCTCAACCTACGATCTCCCACACGGCAACCTTAAATCAAGCAATGTTCTTCTAAACGACAACTACGATCCACTCCTAAGTGATTATGCATTCCATCCATTAATCAATCCAAACAACGCAACTCAAGCTATGTTCGCTTATAGATCTCCAGAATACACACAATACCAGGAAGTTTCTCCAAAGTCTGATGTTTATTGCCTTGGAATTATCATTCTCGAGATTCTTACCAGCAAATTTCCTTCTCAATATCTTAGCAATGGCAAAGGTGGTACTGATGTTGTCCAATGGGTTTGGTCGGCTGTTTCTGAACGGAGAGAGTCTGAGCTTATCGATCCCGAGATCGCGACCGATGCCAGTTCGCTCGATCAGATGGTGGAGCTTCTGAGAATTGGTGCTGATTGTACGGAGAGCAATCCTCAGCAACGGCCGGAGATGAGAGAGGCTATTAGGAGAATAGAGGAAATATAA 1890 44.07 MAAAVPSLLLFLSLSLSLFFPFAVPLSENQALLKLKKSFTNSASLSSWNEDTIPCIARWTGLICNRGIITGLHLSSLGLSGDIDIEALLELRGLRTVSFVNNDFSGPIPSFNKIGVLKALLLTGNNFSGEIPNDFFSSLTSLKKVWLAGNKFSGRIPDSLGELDHLIELHLESNQFSGPIPNLKQTTISSLDFSNNNLSGEIPASFSKYDGKSFLGNGGLCGKPSPIPCEKNKEGRNPPSSSPSPPGETPANVTKFLGGSLVAVVIFIMFFLIFGSSKRRDDDFDVLMREPMEEVVEVHVPNNSQDKSSNKDQSSRKGGGGGDSKRGGSQHGKTGMSDLVIVNEEKGGFGLADLMKAAAEVLGNGGLGSAYKAVMSNGLSVVVKRMREMNRIGKDGFDAEMRRLGRLKHQNVLTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGVCHAELNWSIRLKIVQGIARGMGFLHSEFSTYDLPHGNLKSSNVLLNDNYDPLLSDYAFHPLINPNNATQAMFAYRSPEYTQYQEVSPKSDVYCLGIIILEILTSKFPSQYLSNGKGGTDVVQWVWSAVSERRESELIDPEIATDASSLDQMVELLRIGADCTESNPQQRPEMREAIRRIEEI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4647146 4649722 + evm.model.ptg000016l.580 HCH10g0580 552653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0580 629 Gene3D Transferase(Phosphotransferase) domain 1 432 629 - -
HCH10g0580 629 FunFam Pollen receptor-like kinase 1 432 629 - -
HCH10g0580 629 Gene3D Ribonuclease Inhibitor 186 226 IPR032675 -
HCH10g0580 629 SUPERFAMILY Protein kinase-like (PK-like) 360 625 IPR011009 -
HCH10g0580 629 ProSiteProfiles Protein kinase domain profile. 356 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0580 629 MobiDBLite consensus disorder prediction 297 337 - -
HCH10g0580 629 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 629 IPR046959 -
HCH10g0580 629 Gene3D Phosphorylase Kinase; domain 1 327 431 - -
HCH10g0580 629 CDD STKc_IRAK 362 629 - -
HCH10g0580 629 MobiDBLite consensus disorder prediction 225 251 - -
HCH10g0580 629 Pfam Leucine Rich Repeat 189 208 IPR001611 GO:0005515(InterPro)
HCH10g0580 629 Pfam Leucine Rich Repeat 117 136 IPR001611 GO:0005515(InterPro)
HCH10g0580 629 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515(InterPro)
HCH10g0580 629 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
HCH10g0580 629 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
HCH10g0580 629 SUPERFAMILY L domain-like 26 209 - -
HCH10g0580 629 FunFam Nuclear pore complex protein NUP107 26 182 - -
HCH10g0580 629 MobiDBLite consensus disorder prediction 301 317 - -
HCH10g0580 629 Pfam Protein kinase domain 360 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0580 HCH-Chr10:4647146 HCH4g0363 HCH-Chr4:2404730 9.30E-95 dispersed
HCH10g0580 HCH-Chr10:4647146 HCH8g1095 HCH-Chr8:46758794 8.40E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80992 PF00069 Pkinase 2.20E-27 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0580 K28077 - csv:101215919 877.47