Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0582 ATGAAAGCTCCACCAAATGGCTTTTTGGCCAATTCAGGCGAAGGTGAAAGGAAGAATATTAACTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTGTCCTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCCAACTACCCTAACCTTCCTTCAAAGTTGATTTGCATGCTCCATAACGTCACATTACATGCTGATCCAGAAACTGACGAAGTGTATGCACAAATGACGCTTCAACCAGTGACTAAATATGAAAAAGAAGCTTTACTGGCATCTGACATTGGCCTCAAGCAAAACAGGCAGCCTACCGAATTCTTCTGCAAAACTCTTACAGCTAGCGACACCAGCACCCATGGTGGATTTTCTGTACCTCGCCGTGCAGCTGAGAAGATTTTCCCCCCATTAGATTTCTCGATGCAGCCGCCTGCTCAAGAAATAGGGGCTAGAGATTTGCATGATAGCTCATGGACGTTCAGACATATTTACCGCGGTCAACCAAAAAGGCACCTTCTGACGACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCTGTGCTTTTCATAAGAGATGAAAAATCACAGCTTCTCTTAGGCATAAGGCGTGCAAACCGGCAGCAGCCAGCCCTCTCCTCTTCAGTCATATCAAGTGACAGCATGCACATAGGGATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCAAGGGCCAGTCCTTCTGAATTTGTGATTCCCTTGGCCAAGTATAATAAGGCCATGTATACCCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAGACTGAGGAGTCAGGAGTACGCAGATACATGGGCACAATTACTGGTATTAGTGACATGGATTCTGTGCGATGGAAAGGTTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAGCGGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAAGTGGAGCCCGTTGTGACCCCCTTTTACATATGTCCACCTCCGTTTTTCAGGCCCAAGTTTCCTAAACAACCAGGGATACCAGATGATGAATCCGATATGGAAAGTGCTTTTAGAAGAGCCATGCCCTGGTTCGGTGATGACTTTGGCATGAAGGATACACCAAGCTCAATCTTTCCTGGTTTGAGTTTGGTGCAGTGGATGAGCATGCAACCTAATAATCAGTTTCCAGCTGCTCAGCCTGGAATTTTACCGTCCATGGTTTCTCCAAATGCCATGCATAATACTCTTACTAATGACGACCCATCTAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTTCAATTTGGCAAAGCAAATCAACAAAACCAAGTTGGCCCATTGCCCATGCCGACTACTACGTGGTCTCAACAGCAGCAGCTGCAGCAGTTATTGCAGGTTCCTGCAACTCAACAGCTTCAGCAGCAGCCACCACCACCACAGCAGGAACTGCAACAGCAGCAACTACAACCACAGCAGCTGCCCCAGCAACCGCAATCGCAGACACAACGACAACAGCAGCAGCAACAGCAGACCTGCCAATCTGCTCTTCTGAACAATGGTGTAGCTGCTGCAAATCATTTACCAAATCAGAGTTTGCAACAACCACTTGCCTACTCGCAGCTTCAACAACAGCAGTTACTGCCGAACAATATGCAATCACATCAAGCTAGCCAACCATCCAGTAAGAATTCATTTCAGATGACATCTTTATCACAAGAAACACAATTTCAGCCACAAATAGAGCAGCAACCTAACCTTCTTCCGAGACACCAGCAGCAGACTCAATTTCAACAGTCCCCGCTACATTTGTTGCAACAAAGTCTTTCTCAAAGAGCACAACAACAGCCACAAGTTCAGCAATTTTCACAGACAATCCCGTCAGAGCAACAACTTCAATTTCAGTTTCTACAGAAGTTGCAACAACAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAACAGCAACAACAGCAGCAGCAGCCAGCATTGCTCTCCCCAGCTAGCTCACTATTACCACCCCAGCTGCTACAACAACAGCATGTTCATCAGCAGAACCAACAATTACCACCATTGCCTTTGTCCAATCAGCAACAGTTCAATACTAATGGCGGCAGCTTCTCAACAGAAAAACTCAACAGCAATGGCTTCTCAAGTTTAGGCCTCATGCAGTCGCTGCAGGTTCCTGTAAACCAACCCCAAACCCAAAGCCAATTCAAACCAATCACAGCAATTAGAGCATATTCTGGATTGACGGATGGAGATGCTCCATCTTGTTCAACCTCGCCTTCCACTAATAATTGCCAAGTTTCAGCATCGAATCTACTGAATAAGAACCAACAAGGACCAGCCACATTGGGGGGAGATTCAGTAGTTGAGCCTGCAACTAATCTGCTTCAGGAGCTTCAAAGCAAACATGATTCGCGGATCAAACACGAATTTCCAATCTCAAAAGGACCAGACCACCTAAAATATAAAGGCACCATTCCTGATCAGTTAGAAGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAACAGACTTTCCCACTTCCTACATGTTTGGATAGTGATGTCCAATCACATCCACGAAACAGTATTCCTTTCACTAATAGTATTGATGGATTGGCACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAATTTACTTTCAAACTATGGAGGTGGCGTGCCAAGAGATATTGAGACAGAGTTATCCACTGCTGCTATCAGCTCTCAGTCGTTTGGGGTTCCAAACTTGCCTTTCAAACCTGGGTGCTCAAACGATGTCAATGTAAATGAAGCTGGAGCCTTGAGTAGTGGATTGTGGGCTAACCAAAATCAACGTATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATTGATGTCACTCGTTACAAAGGATATGACGAGCTTAGACACGATCTTGCTCGCATGTTTGGCATTGAAGGGCAGCTAGAAGAACCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGTGATGATCCCTGGGAAGAGTTTGTGAGTTGTGTTCAGAGCATAAAGATACTGTCGTCTGTTGAAGTACAGCAGATGGGTGTGGATGGAGATTTGGGTAACATTCCAGCTCCCAATCAAGCTTGCAGTGGGACTGATAGTGGGAATGCATGGAGAGGGCACTATGATGATAACTCCGCTGCATCATTCAATCGATGA 3399 45.34 MKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVTKYEKEALLASDIGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIGARDLHDSSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKGSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGIPDDESDMESAFRRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQPNNQFPAAQPGILPSMVSPNAMHNTLTNDDPSKLLSFQAPVLSSPNLQFGKANQQNQVGPLPMPTTTWSQQQQLQQLLQVPATQQLQQQPPPPQQELQQQQLQPQQLPQQPQSQTQRQQQQQQQTCQSALLNNGVAAANHLPNQSLQQPLAYSQLQQQQLLPNNMQSHQASQPSSKNSFQMTSLSQETQFQPQIEQQPNLLPRHQQQTQFQQSPLHLLQQSLSQRAQQQPQVQQFSQTIPSEQQLQFQFLQKLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPALLSPASSLLPPQLLQQQHVHQQNQQLPPLPLSNQQQFNTNGGSFSTEKLNSNGFSSLGLMQSLQVPVNQPQTQSQFKPITAIRAYSGLTDGDAPSCSTSPSTNNCQVSASNLLNKNQQGPATLGGDSVVEPATNLLQELQSKHDSRIKHEFPISKGPDHLKYKGTIPDQLEASSSGTSYCLDAGTIQQTFPLPTCLDSDVQSHPRNSIPFTNSIDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANQNQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEEPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSVEVQQMGVDGDLGNIPAPNQACSGTDSGNAWRGHYDDNSAASFNR 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4660903 4670094 - evm.model.ptg000016l.578 HCH10g0582 552655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0582 1132 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH10g0582 1132 FunFam Auxin response factor 1000 1094 - -
HCH10g0582 1132 Pfam AUX/IAA family 1000 1091 IPR033389 -
HCH10g0582 1132 SUPERFAMILY CAD & PB1 domains 1008 1083 - -
HCH10g0582 1132 MobiDBLite consensus disorder prediction 722 757 - -
HCH10g0582 1132 MobiDBLite consensus disorder prediction 474 544 - -
HCH10g0582 1132 Gene3D - 289 360 - -
HCH10g0582 1132 MobiDBLite consensus disorder prediction 587 614 - -
HCH10g0582 1132 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677(InterPro)
HCH10g0582 1132 Gene3D - 1000 1094 - -
HCH10g0582 1132 FunFam Auxin response factor 289 361 - -
HCH10g0582 1132 Gene3D - 123 227 IPR015300 -
HCH10g0582 1132 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
HCH10g0582 1132 ProSiteProfiles PB1 domain profile. 1005 1089 IPR053793 -
HCH10g0582 1132 Coils Coil 673 705 - -
HCH10g0582 1132 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 1096 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH10g0582 1132 CDD B3_DNA 125 226 IPR003340 GO:0003677(InterPro)
HCH10g0582 1132 FunFam Auxin response factor 124 228 - -
HCH10g0582 1132 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
HCH10g0582 1132 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0205 HCH-Chr10:1652740 HCH10g0582 HCH-Chr10:4660903 4.90E-232 dispersed
HCH10g0582 HCH-Chr10:4660903 HCH14g1100 HCH-Chr14:37927991 1.40E-162 dispersed
HCH10g0582 HCH-Chr10:4660903 HCH3g0834 HCH-Chr3:6324251 1.80E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32450 PF02309 AUX_IAA 2.60E-09 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0582 K14486 - csv:101210917 1012.29