Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0595 ATGGAATCGGAGGATGAGCTCGACATGCACGATGCCCACGACGATGATGAAGAGTCCATGGACAATGACGATGCCTTCTACAGCGGCGGAGAAGATGACGCTGCTGCTATCGACAGCGACGACGCCGATGTGGGGGATTACGGGTTTGTTGATAATGACTCCGATGATTCTGACGATATGGTCACTTATCGACACCAGCAAAACTATGTCATCTTGGCCGAGGTAGATATACAGCAGCGACAGGATGAAGATATTATGAGAGTGTCCACTGTTCTTTCTATTTCAAAAGTAGCTGCCAGCATTTTGCTTCGATATTACAATTGGAGTGTCAGTAAAGTACATGATGAGTGGTTTGCAGATGAAGAAAAGGTGCGTAGAGTGGTTGGCTTATTAGAAAAACCCGTTCTGCAATATTCAGATGAATTAGAACTTCCTTGTGGTATATGTTTTGAGATCTATCCACGTGATAGGATTCACTCTGCCGCTTGTGGGCATCCATTTTGCAATACATGTTGGACAGGTTATATTAGCACATCAATCAATGATGGTCCAGGATGTCTGATGTTGCGATGTCCAGATCCATCTTGTGCTGCTGCTATTGGTCAAGATATGATAAATTTATTGGCTTCTGATGATGACAAAAAGAAGTACTTTCGCTACTTTGTTCGATCATATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGCAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAAGAAGCTCACCGTCCTGTTGATTGTGGCACTGTAGCAAGATGGATATTGAAGAATAGTGCTGAGTCAGAAAATATGAATTGGATATTGGCAAATTCCAAACCTTGTCCAAAATGCAAGCGGCCTATTGAGAAAAATCAGGGATGCATGCATATTACTTGCACACCACCTTGTAAATTCGAGTTTTGCTGGCTTTGCCTTGGTCCATGGTCGGACCATGGAGAGAGGACTGGGGGATTCTATGCATGTAACCGCTATGAAACTGCAAAGCAAGAAGGAGTGTATGATGATGCTGAGAAGCGTAGAGAGATGGCTAAGAATTCTCTCGAGAGATATACTCATTATTATGAAAGATGGGCTACGAACCAATCGTCTAGGCAAAAGGCACTTGCGGACCTCCATCAAATGCAAACCGTGCATTTGGAGAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTGAAGTTCATAACAGAAGCATGGCTACAGATTGTTGAATGTAGAAGAGTTCTTAAATGGACTTATGCCTACGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAGTTCTTTGAATACTTGCAGGGTGAGGCTGAATCTGGGTTGGAACGACTTCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCTGATGGTCCTTCAAAAGATTTTAATGAGTTTCGCACCAAACTTGCTGGACTAACCAGTGTGACTCGGAATTACTTTGAGAATTTAGTACGTGCTCTTGAGAATGGTCTGTCAGATGTGGACTCCCATGGTACCTGCAGCAGAACAGCGAGCTCTAAGAGTACTGGTGGCTGTAGGAGTAAAGGTGGGAAGGGCAAGATTAGTGCATCCAAAGCTAGCGGTTCAAGTAGGAATATTGATGATCCGGACCACTGGTCTTGTGAACATTGCACCTTTGCAAATGTAAAGTCAGCTACCCTCTGTCAGATGTGCCAGCAACGGCGATAA 1791 43.83 MESEDELDMHDAHDDDEESMDNDDAFYSGGEDDAAAIDSDDADVGDYGFVDNDSDDSDDMVTYRHQQNYVILAEVDIQQRQDEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRVVGLLEKPVLQYSDELELPCGICFEIYPRDRIHSAACGHPFCNTCWTGYISTSINDGPGCLMLRCPDPSCAAAIGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSTGGCRSKGGKGKISASKASGSSRNIDDPDHWSCEHCTFANVKSATLCQMCQQRR 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4806311 4829745 + evm.model.ptg000016l.565 HCH10g0595 552668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0595 596 MobiDBLite consensus disorder prediction 1 58 - -
HCH10g0595 596 Pfam Ariadne domain 364 529 IPR045840 -
HCH10g0595 596 MobiDBLite consensus disorder prediction 528 546 - -
HCH10g0595 596 CDD RING-HC_ARI6-like 143 204 - -
HCH10g0595 596 SMART ibrneu5 281 351 IPR002867 GO:0008270(InterPro)
HCH10g0595 596 SMART ibrneu5 215 277 IPR002867 GO:0008270(InterPro)
HCH10g0595 596 SUPERFAMILY RING/U-box 143 224 - -
HCH10g0595 596 Gene3D - 273 528 - -
HCH10g0595 596 CDD BRcat_RBR_ANKIB1 222 286 - -
HCH10g0595 596 SMART zf_4 571 595 IPR001876 -
HCH10g0595 596 MobiDBLite consensus disorder prediction 527 567 - -
HCH10g0595 596 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 402 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
HCH10g0595 596 MobiDBLite consensus disorder prediction 1 56 - -
HCH10g0595 596 FunFam RBR-type E3 ubiquitin transferase 140 229 - -
HCH10g0595 596 ProSiteProfiles Zinc finger RanBP2 type profile. 569 596 IPR001876 -
HCH10g0595 596 SUPERFAMILY Ran binding protein zinc finger-like 569 596 IPR036443 -
HCH10g0595 596 SUPERFAMILY RING/U-box 296 344 - -
HCH10g0595 596 Pfam IBR domain 299 339 - -
HCH10g0595 596 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
HCH10g0595 596 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 GO:0008270(InterPro)
HCH10g0595 596 SUPERFAMILY RING/U-box 216 284 - -
HCH10g0595 596 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
HCH10g0595 596 CDD Rcat_RBR_ARI7-like 300 354 - -
HCH10g0595 596 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 79 118 IPR048962 -
HCH10g0595 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 227 IPR013083 -
HCH10g0595 596 Gene3D - 568 596 - -
HCH10g0595 596 FunFam RBR-type E3 ubiquitin transferase 278 528 - -
HCH10g0595 596 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0037 HCH-Chr10:304267 HCH10g0595 HCH-Chr10:4806311 6.50E-255 dispersed
HCH10g0595 HCH-Chr10:4806311 HCH4g0690 HCH-Chr4:4484080 6.90E-140 dispersed
HCH10g0595 HCH-Chr10:4806311 HCH4g0689 HCH-Chr4:4477074 1.30E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0595 K11968 - csv:101218052 1110.13