Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0603 ATGGGTTCTATGAACTGGTTGGGTTTCTCTCTTTCCCCTCAACAACTCCCTCAGCCATCGGCAGACGACCACCACCACCACTCCCACGGTGGCTACAACACCGATGAAATCTCCGGCACCGACGTCTCTGGTATCTGTTTTGATCTTGCTTCTGATAATACTCCTCCTCCTTCCCTTAACCTTCCTTCTAACTATGGAGTTTATGAAGCCTTCAACCGCCATAATCACTCACAAGATTGGAATAATTTGAAGGGTTTAGAAGATGCAAATTACAAGTCTACGGCTCACAGTTCAGATTTCTCAATGTTAATGGGAACTACTTCTTGTAGTAGTGAAAATATCGAAACACATCACCATCACCAACCAAAGCTTGAAAACTTTCTCGGCCGCCACTCTTTCACAGATCACGAACATGCCGCCGCTGCCGCAGCCGCATACGGTAATGCATCAGGCAATTATAGTACGTTTCAGAACTGTTCCTTGCCGCTTCCTTCTGAGGCTTCCGTAGCCGCGATTGAGGCGACGACGAGTGGTGGAGGTGGTGGTAATGGTGGTGGAAGAGGTACTAGTAGTACTAGTAATGTCAATGGTGGCAATAATAGCTCTATTGGGTTGTCTATGATCAAGACATGGCTGAGGAATCAGCCGGCACCCCCGCAAGCGGTGAACAAGAGCGGTGGAGATGATGGTGCAATTGGTGGACAGCAGCACGGTGGAGTTATTACAAATGCACAAACGTTATCACTCTCTATGAACACCGGTCCTCCGTCGCGTTCGGGCTCGGCTCTGCCTCTTTTGACAGCCAACGGTGGAGGAAACGGCCGCGACAGTTCTTCATCGGATAACAAGCAATCCGAAGAGGTGGAAACTGGTGCTGTTGCTGAAACTGTGCCTAGAAAATCCATTGATACTTTTGGACAAAGAACTTCAATATACCGTGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATTTATGGGATAATAGTTGTAGAAGAGAAGGGCAAACTAGAAAAGGAAGGCAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCAAGAGCCTATGATTTAGCAGCACTCAAATACTGGGGTACCACTACCACCACTAATTTTCCAATTAGTGATTACGAAAAAGAAGTGGAAGATATGAAGCACATGACGAGGCAAGAGTTTGTTGCGTCCCTAAGAAGGAAGAGTAGTGGATTTTCTCGTGGAGCTTCCATCTACCGAGGGGTAACAAGACACCATCAACATGGGAGATGGCAAGCAAGAATAGGAAGAGTTGCAGGGAATAAAGACCTCTACTTGGGAACTTTCAGCACACAAGAGGAAGCAGCAGAGGCCTATGACATTGCAGCCATAAAGTTTAGAGGATTAAACGCAGTAACCAACTTCGATATGAGCAGATATGATGTTAAAGCCATACTCGAAAGCAACACTTTACCTATTGGTGGCGCTGCTAAGCGTTTGAAAGACGTCGATCACTCCGAAATGACTCTCGACACTAAAAGAAACGACGACGACAGCAACAACGTCACCTCCCACCTCTCCGACAGCATCACCACCTCCTATGGTGGCGCGTGGCCATCAGCTCTTTCCTACCACCACCACCCCTACTCTTATAATTACCCTTATGGGCAACAACAACAAAGGATATGGTGCAAACAAGAACACGCCGTCCCTGAAGCTTCCCATGGAGGCGCTACCGGTCTTCATGATCTTCATCAACTTCAACTAGGTAATACTCATAACTTCTTCCAACACAACCTTCTCGCCATGGATTCTGCGGCCGTATCAGTGTCGATGGAGCATAGTTCCGGCTCTAACTCTATCATTTACAATGGAGATGGATATAGCAGCGGGGGCGGGGGCGGCGGATATGTCATTCCAATGGGAACAGTTGTAGGAGAAGGAAGTAATAATAATGGTGGATTGGGATCAGATGGAGATGTGTTTGGTTCAAATGTGGATTCTTATCATGCAAGGAACAACTTGCAGTATTATCATTCTCAACTACAACATGCGGCGGTGCAGACGGAGGTGAAGGGCGGTGCCACCGCCGGTTATGATCAAGGATCAACATGCAACAATTGGGTTCCAACGGCGGTTCCAACTAATTTCACAATATGGAACGATACATAA 2157 46.92 MGSMNWLGFSLSPQQLPQPSADDHHHHSHGGYNTDEISGTDVSGICFDLASDNTPPPSLNLPSNYGVYEAFNRHNHSQDWNNLKGLEDANYKSTAHSSDFSMLMGTTSCSSENIETHHHHQPKLENFLGRHSFTDHEHAAAAAAAYGNASGNYSTFQNCSLPLPSEASVAAIEATTSGGGGGNGGGRGTSSTSNVNGGNNSSIGLSMIKTWLRNQPAPPQAVNKSGGDDGAIGGQQHGGVITNAQTLSLSMNTGPPSRSGSALPLLTANGGGNGRDSSSSDNKQSEEVETGAVAETVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKEVEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDVDHSEMTLDTKRNDDDSNNVTSHLSDSITTSYGGAWPSALSYHHHPYSYNYPYGQQQQRIWCKQEHAVPEASHGGATGLHDLHQLQLGNTHNFFQHNLLAMDSAAVSVSMEHSSGSNSIIYNGDGYSSGGGGGGYVIPMGTVVGEGSNNNGGLGSDGDVFGSNVDSYHARNNLQYYHSQLQHAAVQTEVKGGATAGYDQGSTCNNWVPTAVPTNFTIWNDT 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4896967 4900836 - evm.model.ptg000016l.557 HCH10g0603 552676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0603 718 Gene3D AP2/ERF domain 413 473 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 Gene3D AP2/ERF domain 311 379 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 SUPERFAMILY DNA-binding domain 412 473 IPR016177 GO:0003677(InterPro)
HCH10g0603 718 ProSiteProfiles AP2/ERF domain profile. 311 377 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 ProSiteProfiles AP2/ERF domain profile. 413 471 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 SMART rav1_2 413 477 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 SMART rav1_2 311 383 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 209 514 - -
HCH10g0603 718 MobiDBLite consensus disorder prediction 182 200 - -
HCH10g0603 718 FunFam AP2-like ethylene-responsive transcription factor 412 473 - -
HCH10g0603 718 SUPERFAMILY DNA-binding domain 310 379 IPR016177 GO:0003677(InterPro)
HCH10g0603 718 FunFam AP2-like ethylene-responsive transcription factor ANT 310 379 - -
HCH10g0603 718 PRINTS Ethylene responsive element binding protein signature 312 323 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 PRINTS Ethylene responsive element binding protein signature 453 473 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 MobiDBLite consensus disorder prediction 216 295 - -
HCH10g0603 718 MobiDBLite consensus disorder prediction 174 200 - -
HCH10g0603 718 CDD AP2 412 473 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 MobiDBLite consensus disorder prediction 238 289 - -
HCH10g0603 718 CDD AP2 310 379 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 Pfam AP2 domain 312 369 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 Pfam AP2 domain 414 463 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0603 718 MobiDBLite consensus disorder prediction 11 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0603 HCH-Chr10:4896967 HCH2g1390 HCH-Chr2:55674648 1.80E-105 dispersed
HCH10g0603 HCH-Chr10:4896967 HCH8g1037 HCH-Chr8:46330493 1.50E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32451 PF00847 AP2 1.70E-12 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0603 K09285 - vvi:100241060 756.903