Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0603 | ATGGGTTCTATGAACTGGTTGGGTTTCTCTCTTTCCCCTCAACAACTCCCTCAGCCATCGGCAGACGACCACCACCACCACTCCCACGGTGGCTACAACACCGATGAAATCTCCGGCACCGACGTCTCTGGTATCTGTTTTGATCTTGCTTCTGATAATACTCCTCCTCCTTCCCTTAACCTTCCTTCTAACTATGGAGTTTATGAAGCCTTCAACCGCCATAATCACTCACAAGATTGGAATAATTTGAAGGGTTTAGAAGATGCAAATTACAAGTCTACGGCTCACAGTTCAGATTTCTCAATGTTAATGGGAACTACTTCTTGTAGTAGTGAAAATATCGAAACACATCACCATCACCAACCAAAGCTTGAAAACTTTCTCGGCCGCCACTCTTTCACAGATCACGAACATGCCGCCGCTGCCGCAGCCGCATACGGTAATGCATCAGGCAATTATAGTACGTTTCAGAACTGTTCCTTGCCGCTTCCTTCTGAGGCTTCCGTAGCCGCGATTGAGGCGACGACGAGTGGTGGAGGTGGTGGTAATGGTGGTGGAAGAGGTACTAGTAGTACTAGTAATGTCAATGGTGGCAATAATAGCTCTATTGGGTTGTCTATGATCAAGACATGGCTGAGGAATCAGCCGGCACCCCCGCAAGCGGTGAACAAGAGCGGTGGAGATGATGGTGCAATTGGTGGACAGCAGCACGGTGGAGTTATTACAAATGCACAAACGTTATCACTCTCTATGAACACCGGTCCTCCGTCGCGTTCGGGCTCGGCTCTGCCTCTTTTGACAGCCAACGGTGGAGGAAACGGCCGCGACAGTTCTTCATCGGATAACAAGCAATCCGAAGAGGTGGAAACTGGTGCTGTTGCTGAAACTGTGCCTAGAAAATCCATTGATACTTTTGGACAAAGAACTTCAATATACCGTGGTGTAACAAGGCATAGATGGACAGGAAGATATGAAGCTCATTTATGGGATAATAGTTGTAGAAGAGAAGGGCAAACTAGAAAAGGAAGGCAAGTCTATTTGGGAGGTTATGACAAAGAAGAAAAGGCAGCAAGAGCCTATGATTTAGCAGCACTCAAATACTGGGGTACCACTACCACCACTAATTTTCCAATTAGTGATTACGAAAAAGAAGTGGAAGATATGAAGCACATGACGAGGCAAGAGTTTGTTGCGTCCCTAAGAAGGAAGAGTAGTGGATTTTCTCGTGGAGCTTCCATCTACCGAGGGGTAACAAGACACCATCAACATGGGAGATGGCAAGCAAGAATAGGAAGAGTTGCAGGGAATAAAGACCTCTACTTGGGAACTTTCAGCACACAAGAGGAAGCAGCAGAGGCCTATGACATTGCAGCCATAAAGTTTAGAGGATTAAACGCAGTAACCAACTTCGATATGAGCAGATATGATGTTAAAGCCATACTCGAAAGCAACACTTTACCTATTGGTGGCGCTGCTAAGCGTTTGAAAGACGTCGATCACTCCGAAATGACTCTCGACACTAAAAGAAACGACGACGACAGCAACAACGTCACCTCCCACCTCTCCGACAGCATCACCACCTCCTATGGTGGCGCGTGGCCATCAGCTCTTTCCTACCACCACCACCCCTACTCTTATAATTACCCTTATGGGCAACAACAACAAAGGATATGGTGCAAACAAGAACACGCCGTCCCTGAAGCTTCCCATGGAGGCGCTACCGGTCTTCATGATCTTCATCAACTTCAACTAGGTAATACTCATAACTTCTTCCAACACAACCTTCTCGCCATGGATTCTGCGGCCGTATCAGTGTCGATGGAGCATAGTTCCGGCTCTAACTCTATCATTTACAATGGAGATGGATATAGCAGCGGGGGCGGGGGCGGCGGATATGTCATTCCAATGGGAACAGTTGTAGGAGAAGGAAGTAATAATAATGGTGGATTGGGATCAGATGGAGATGTGTTTGGTTCAAATGTGGATTCTTATCATGCAAGGAACAACTTGCAGTATTATCATTCTCAACTACAACATGCGGCGGTGCAGACGGAGGTGAAGGGCGGTGCCACCGCCGGTTATGATCAAGGATCAACATGCAACAATTGGGTTCCAACGGCGGTTCCAACTAATTTCACAATATGGAACGATACATAA | 2157 | 46.92 | MGSMNWLGFSLSPQQLPQPSADDHHHHSHGGYNTDEISGTDVSGICFDLASDNTPPPSLNLPSNYGVYEAFNRHNHSQDWNNLKGLEDANYKSTAHSSDFSMLMGTTSCSSENIETHHHHQPKLENFLGRHSFTDHEHAAAAAAAYGNASGNYSTFQNCSLPLPSEASVAAIEATTSGGGGGNGGGRGTSSTSNVNGGNNSSIGLSMIKTWLRNQPAPPQAVNKSGGDDGAIGGQQHGGVITNAQTLSLSMNTGPPSRSGSALPLLTANGGGNGRDSSSSDNKQSEEVETGAVAETVPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKEVEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDVDHSEMTLDTKRNDDDSNNVTSHLSDSITTSYGGAWPSALSYHHHPYSYNYPYGQQQQRIWCKQEHAVPEASHGGATGLHDLHQLQLGNTHNFFQHNLLAMDSAAVSVSMEHSSGSNSIIYNGDGYSSGGGGGGYVIPMGTVVGEGSNNNGGLGSDGDVFGSNVDSYHARNNLQYYHSQLQHAAVQTEVKGGATAGYDQGSTCNNWVPTAVPTNFTIWNDT | 718 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4896967 | 4900836 | - | evm.model.ptg000016l.557 | HCH10g0603 | 552676 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0603 | 718 | Gene3D | AP2/ERF domain | 413 | 473 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | Gene3D | AP2/ERF domain | 311 | 379 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | SUPERFAMILY | DNA-binding domain | 412 | 473 | IPR016177 | GO:0003677(InterPro) | |
HCH10g0603 | 718 | ProSiteProfiles | AP2/ERF domain profile. | 311 | 377 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | ProSiteProfiles | AP2/ERF domain profile. | 413 | 471 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | SMART | rav1_2 | 413 | 477 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | SMART | rav1_2 | 311 | 383 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 209 | 514 | - | - | |
HCH10g0603 | 718 | MobiDBLite | consensus disorder prediction | 182 | 200 | - | - | |
HCH10g0603 | 718 | FunFam | AP2-like ethylene-responsive transcription factor | 412 | 473 | - | - | |
HCH10g0603 | 718 | SUPERFAMILY | DNA-binding domain | 310 | 379 | IPR016177 | GO:0003677(InterPro) | |
HCH10g0603 | 718 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 310 | 379 | - | - | |
HCH10g0603 | 718 | PRINTS | Ethylene responsive element binding protein signature | 312 | 323 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | PRINTS | Ethylene responsive element binding protein signature | 453 | 473 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | MobiDBLite | consensus disorder prediction | 216 | 295 | - | - | |
HCH10g0603 | 718 | MobiDBLite | consensus disorder prediction | 174 | 200 | - | - | |
HCH10g0603 | 718 | CDD | AP2 | 412 | 473 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | MobiDBLite | consensus disorder prediction | 238 | 289 | - | - | |
HCH10g0603 | 718 | CDD | AP2 | 310 | 379 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | Pfam | AP2 domain | 312 | 369 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | Pfam | AP2 domain | 414 | 463 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0603 | 718 | MobiDBLite | consensus disorder prediction | 11 | 35 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0603 | HCH-Chr10:4896967 | HCH2g1390 | HCH-Chr2:55674648 | 1.80E-105 | dispersed | |
HCH10g0603 | HCH-Chr10:4896967 | HCH8g1037 | HCH-Chr8:46330493 | 1.50E-101 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32451 | PF00847 | AP2 | 1.70E-12 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0603 | K09285 | - | vvi:100241060 | 756.903 |