Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0615 ATGGGGTCCTGCTTGTCAGCTGAGAGCAGGAGTCCCATTCCCGGTTCTCCGGTTTCTCCTGCTTTAGGAACCGGGAAGCGGAAGAACTCGAAAAAACGAAATGGTTCTCGGAATTCTTCCTTCGATTTTCGAGGAGATATGCCTCTGCATCGAATTCCTGGGAGGATGTTCCTGAATGGATTTAGTGAAATTGCGTCTATGTTTACACAGCAGGGTAAGAAAGGGACAAATCAAGATGCCATGATTGTGTGGGAGAATTTTGGATCTAGAACTGACACCGTCTTCTGTGGGGTTTTCGATGGCCATGGCCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGATTGAGTTCACATTGGGAGGTCAACTTGACCAAAGAAGACGTTCTTAGAGCGATCAGCCTTAATACAGGGAGTGTGCACTCGGACGATGCTACCTTTATGTCTGCTGATGAAGAATTTAGGACCTCCAATGATGTTGAGGGACCAGAGAAGCAACCTGAAATTTTTCATACATTGAAGGAGTCATTTTTGAAGGCCTTTAAAGTTATGGACAGGGAACTGAGAATGCACCGGAGTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATGGTCAAACAGGGTCAGGATCTTATCATTGGAAATGTAGGGGACTCCAGAGCTGTTTTGGGTACTAGAGATATGGATGATTCTCTTGTTGCAATTCAATTGACTGTGGATCTCAAACCAAATCTTCCAGCTGAAGCGGAGAGAATTCGGAAGTGTAAAGGTCGTGTTTTTGCTCTCCAGGATGAACCTGATGTTTCTCGAGTTTGGCTTCCAAACTGTAACTCTCCTGGACTTGCCATGGCACGGGCATTTGGAGACTTCTGCCTCAAAGACTTTGGTCTAATCTCTGTACCTGAAATATCATATCGACGACTCACTGAAAAAGATGAATTCATTGTTTTGGCTACAGATGGAATATGGGATGTGCTGTCAAACAAAGAGGTCGTACAGATTGTTGCATCAGCTCCAAAACGAACTACTGCGGCTCGAACCGTGGTTGAGACAGCTATTAAAGCATGGAAACATAAATACCCAACTTCAAAGATTGACGACTGTGCGGTTGTTTGCCTCTTCCTTGACTCGAACCCTACCAATTTATCATCTGCTTCCAGTACCAAATCAGAAGAGAAACATGTATCAGCAGCAGATCAAGTTAGCAATACTGTCGATAATGAAGATCTCTCAGGACCAAACGGTCTGTATCGCTCGGGAACAGTCCGAACTAGCGAGGAAATCATGCAAGAAGGAACTGAAGAAGATGCATCAAAGGAGGAGGAAGAACATTTCGACATGGGAATTGAATGGTCCGCCTTGGAAGGAGTCTCACGTGTAAACACTCTGGTAAACCTGCCGAGATTCGATCCTGAGAAAGAAGAGAAGAAAGGCCGGAAGTAA 1464 44.95 MGSCLSAESRSPIPGSPVSPALGTGKRKNSKKRNGSRNSSFDFRGDMPLHRIPGRMFLNGFSEIASMFTQQGKKGTNQDAMIVWENFGSRTDTVFCGVFDGHGPYGHMVAKKVRDSLPLRLSSHWEVNLTKEDVLRAISLNTGSVHSDDATFMSADEEFRTSNDVEGPEKQPEIFHTLKESFLKAFKVMDRELRMHRSIDSFCSGTTAVTMVKQGQDLIIGNVGDSRAVLGTRDMDDSLVAIQLTVDLKPNLPAEAERIRKCKGRVFALQDEPDVSRVWLPNCNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVQIVASAPKRTTAARTVVETAIKAWKHKYPTSKIDDCAVVCLFLDSNPTNLSSASSTKSEEKHVSAADQVSNTVDNEDLSGPNGLYRSGTVRTSEEIMQEGTEEDASKEEEEHFDMGIEWSALEGVSRVNTLVNLPRFDPEKEEKKGRK 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5015305 5018527 - evm.model.ptg000016l.545 HCH10g0615 552688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0615 487 CDD PP2Cc 64 382 IPR001932 -
HCH10g0615 487 Gene3D - 62 384 IPR036457 -
HCH10g0615 487 FunFam probable protein phosphatase 2C 33 59 385 - -
HCH10g0615 487 ProSiteProfiles PPM-type phosphatase domain profile. 64 382 IPR001932 -
HCH10g0615 487 SUPERFAMILY PP2C-like 59 384 IPR036457 -
HCH10g0615 487 Pfam Protein phosphatase 2C 176 361 IPR001932 -
HCH10g0615 487 SMART PP2C_4 56 380 IPR001932 -
HCH10g0615 487 MobiDBLite consensus disorder prediction 411 451 - -
HCH10g0615 487 PANTHER PROTEIN PHOSPHATASE 39 381 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH10g0615 487 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0033 HCH-Chr10:280843 HCH10g0615 HCH-Chr10:5015305 5.40E-136 dispersed
HCH10g0615 HCH-Chr10:5015305 HCH8g0281 HCH-Chr8:15645117 1.80E-146 dispersed
HCH10g0615 HCH-Chr10:5015305 HCH7g0165 HCH-Chr7:1106621 7.70E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0615 - - - 0.0