Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0668 ATGACTACTCTCTCTTGCCAACCCTCCGATTTAGTACCTCTCCTCGGCACGGCGGCAGCGACGAACACGACCGCGATAGCGGAATTCTTTTGCTCGAGATTCAACTCCATAGCCACCAGTTTCACCACCACCACTTATGCCATAGACAACACATATCTTCTCTTCTCTGCCTACCTAGTCTTCGCCATGCAACTTGGTTTTGCCATGCTATGTGCTGGCTCCGTTAGGGCTAAAAACACTATGAATATCATGCTCACTAATGTCCTTGACGCGGCTGCTGGTGGCCTCTCTTACTATCTTTTTGGCTTTGCTTTCGCCTTCGGAGCTCCCTCGAACGGCTTCATCGGCCGCCATTTCTTCGGCTTGAGCTCTTACCCTTACTCTTCTGGTGATTATAGCTTCTTTCTTTATCAATGGGCTTTTGCTATAGCTGCTGCTGGTATTACTAGTGGCTCTATTGCTGAGAGAACTCAGTTTGTTGCTTATCTTATTTACTCTACGGTTTTGACTGGGTTTGTTTATCCTATTGTTTCTCATTGGTTCTGGTCCGCCGATGGTTGGGCCAGTCCAATTAGACCTGATAATCTTTTATTTGGTTCGGGTGCGATTGACTTCGCGGGCTCCGGTGTGGTCCACATGGTCGGAGGAATAGCCGGCCTATGGGGAGCCCTCATCGAAGGCCCGCGTATAGGCCGATTCGAACGATCTGGTCGGTCGGTCGTGCTACGTGGTCATAGCGCGTCCTTGGTGGTTCTCGGGTCATTTTTGTTGTGGTTCGGGTGGTACGGGTTCAACCCTGGCTCATTTCTCACAATTGCCAAAACCTACAACGACGGTCGGACCTTTTATGGTCAATGGAGCGCTATCGGACGGACGGCTGTAACAACGACGTTAGCGGGATGTACCGCAGCGCTAACGACGTTATTCAGCAAGCGGTTACTCGTCGGTCATTGGAACGTTACCGACGTTTGTAACGGTTTGTTAGGAGGCTTTGCCGCCATCACGTCGGGATGTTCGGTGGTGGAGCCGTGGGCCGCAGTCATATGTGGGTTTGTGGCGGCGTGGGTTTTGATTGGATTCAACAAACTAGCCGAGAAAGTAAAGTACGACGACCCGTTGGAGGCGGCGCAGTTGCACGGCGGTTGCGGCGCGTGGGGTTTACTCTTCACAGGATTATTCGCTAGCAAGAGCTACGTAAGCGAGGTGTATCAACCCGGACGTCCGTACGGGTTGTTAATGGGCGGCGGAGGGAGGCTTTTGGCGGCGCAGATAATCCAAATTCTTGTAATAACGGGATGGGTGACGGCGACGATGGGCCCGCTATTCTACGGGCTACATAAAATGAAACTGCTGCGGATCTCTAGAGATGATGAGATGGCGGGCATGGATTTGACGAGGCATGGAGGGTTTGCTTATTTGTACAACGATGAAGAAGATCCATCGGGGAGACCTGCGTTTATGATGACGAAGATTGAGCCAACCTATGGAAGTCCTGCACTTGATCAAAATTCTCCACCATTAACTGCCGTTTGA 1533 51.27 MTTLSCQPSDLVPLLGTAAATNTTAIAEFFCSRFNSIATSFTTTTYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNGFIGRHFFGLSSYPYSSGDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSTVLTGFVYPIVSHWFWSADGWASPIRPDNLLFGSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFERSGRSVVLRGHSASLVVLGSFLLWFGWYGFNPGSFLTIAKTYNDGRTFYGQWSAIGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAWVLIGFNKLAEKVKYDDPLEAAQLHGGCGAWGLLFTGLFASKSYVSEVYQPGRPYGLLMGGGGRLLAAQIIQILVITGWVTATMGPLFYGLHKMKLLRISRDDEMAGMDLTRHGGFAYLYNDEEDPSGRPAFMMTKIEPTYGSPALDQNSPPLTAV 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5870821 5872353 - evm.model.ptg000016l.492 HCH10g0668 552741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0668 510 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH10g0668 510 Gene3D Ammonium transporter AmtB like domains 29 487 IPR029020 -
HCH10g0668 510 PANTHER AMMONIUM TRANSPORTER 21 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
HCH10g0668 510 SUPERFAMILY Ammonium transporter 46 453 - -
HCH10g0668 510 FunFam Ammonium transporter 30 487 - -
HCH10g0668 510 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
HCH10g0668 510 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0668 HCH-Chr10:5870821 HCH5g0137 HCH-Chr5:822545 2.00E-212 dispersed
HCH10g0668 HCH-Chr10:5870821 HCH6g1444 HCH-Chr6:48186979 1.20E-212 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0668 K03320 - csv:101222356 831.632