Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0690 | ATGGGGACAGAGCTTATACGAGTTTGTGTTGAAGAAGATAATGATGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCATTTTCAGTAGAGAAGGCGCTTAATAATGAAAAACAAGATAGTTATGTTCCTGTTAGTTTGCCAACATCTGTCCCCAAATCACAATCAGTTAAAATGGAAACTGAGGTAGAAGTTGCTGATGTCGCAAAAGTAACAAGGTCCCTCCGGCGAAAACCATGTATAAATTATAGACAGTATGATTATTGCTCCGACGATGAGTTTGATTCTGGCCTTCTTCATCAGAATTTTTCTTCAAAACCTCTTCTTCCAAAGGGGGTCGTTCGTGGATGTGCACAATGTAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCTTGCCGGCCAGACCTTGAGGATGCTCCTGTATTTTACCCAACTGAAGAGGAGTTTGAAGATACTCTGACATACATAGCAAACATACGAGAAAGAGCGGAACCATATGGGATTTGCCGTATTGTCCCCCCTTCTTCTTGGAAACCTCCATGCCCTCTGAAGCAGAAACATATTTGGGAGAGTTCCAAGTTTTCAACTCGTGTCCAAAGGATTGATAAGCTTCAAAATCGGAATTCAATTAGAAAGATGTTTAGGATTCACAATCAAATGAAGAGGAAAAGGAGAAGATGTAACCGAAAGGGGGCAGATGGTACCACATTAAATGGAAAAATAGGAGATATTGGATCTAGTGAAGCCGAAAGATTTGGGTTTGATCCCGGTCCAGATTTTACTTTAGCAGCCTTCCAAAAGTATGCAGATGACTTTAAGTCTCAATATTTTAGTAATGTACGCAATGATACTGTAAAGGGATGTAATGCAAACGTGCCCCAAGAGAGAGAGCATTGGGAACCATCTTTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCATCTGAACAAATTGAGGTGCTATATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGCGGTTTTCCAAAAAGCTGCTATCAAGATGGCTCTACATCATATGAAGACAAGTATGTAAAATCTGGATGGAACCTGAACAACTTTCCAAGGCTTCCTGGTTCAGTTCTTAGTTATGAAAGCGGTGATATATCTGGAGTTTTGGTACCATGGTTATATATTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTTAATTACATGCACTGGGGGGATCCTAAAATATGGTATGGTGTTCCAGGAAACTATGCTGGTAAGTTAGAGGAGGCTATGAGAAAGCATTTACCCGATCTTTTTGAAGAACAACCTGATTTGCTTCATAAGCTGGTTACACAACTTTCTCCCTCCATATTGAAATCCGAGGGCGTACCTGTATATAAGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCTTACCATGCAGGATTCAACAGTGGTTTGAATTGTGCAGAAGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTGTATCGTGAGCAGGGGAGAAGGACTACTATTTCTCATGATAAATTATTGCTTGGTGCTGCAAGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTTAAAAAGAATACTTTGGATAACTTGAGATGGAATAATGTATGTGGGAAAGATGGAGTCTTAGCAAAAGCGTTCAAGGCACGTGTTGAAATTGAGTGTGCTCGGAGAAATTTTCTTTGCAGTTCTTCTCAGGCAGTAAAAATGGAGAGCAGCTTTGATACCTCTAGTGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCACCTGTCTGCGGTGGGGTGTCATTGTTCCCCAGATAGATATGCGTGCTTGAATCATGCAAAACAGTTGTGTTCGTGTGCTTTGGGAGACAGATTGTTTCTCTTTCGCTATGACATCAGTGAGTTGAACATGCTTGTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATATAGATGGGCTAGGCAGGATCTTGGTCTGGCGCTCAGTTCTTACATCTCTAAAGAAAAGCAAGGAGGCAATGCGACTCGTAATTCTGGAGGAACAGTATCTAGAGATTTGAGTTCCAAATCTGTAGTTAATTCCCTTGGGGATCCTCAATGGAAAGAATTATTAAGACAATCCCCAATAACATCAACTTGGACCTCTACCTACACCACTTCTCAGCATAAAAAGAACTTATTTGAAGTTTCAGCTACTTTCCAGGAAGCCCAGAAGGTGATTTCCACACTTAATGTATCTGGGAAGGAACTTGAGTTGAAAAAACCTAAATCTGAGTTGAAAAGTGAAGACTGCAATCTTGAGGCAACCAATTTAAGGTTTGTAGGCTCTCAGATGTCTGAAGAGGACACATATGCTCTGAAGCTGGTTGAAGGGAAAAACAGAATGGATAAAACATCTGCTGAAAGTGTCATACTTCTTAGTGATGATGAAGGTAGTGAGCAGAAGAAGCCAGTTTCAATTGGAGAAGCTGAAAGTTCATTGTTAAAGCATTTGGAAACTTCTGATAGGTTTACAGATGTTGATTCTAAGGCTAGCCTTTGCAACTATGATGAAAATGCAATCTTACACACCCCGGTGACTGATGCAACTAGCATAGGAGAAACAGAGGTCAAATTGTTGGCTGATAGAAAAGGGAATAATTTCCAAGTCAGTGTTGTACCAACAGATAATAAACATTCTCAACATATTAACTTAGTATCATCAGTTAAAAATGAACCAATTGCTGCTCAGAAAAACAATTCTCCAGAGGCGGGACTAGGTCTCAGTGATAAAGTATATCCAGCTTCAATGGACACTGATTTTCAGCAACCACAGGTATGTGGCTCTGCAAAACCAAATGAGAGCAAGCATGGAAATAAGGGGACAAATGCTACCTTACATTTATCAGACACCAATAGAACTACTTCTGGAAATTTATCTTGCAATCAAATTAATGTGGACAGAATCTTAAGGCAAAAGGGTCCTCGAATAGCAAAAGTAGTACGGAGGATCAACTGCAATGTAGAGCCTTTAGAATATGGAGTCGTGCTTTCAGGAAAGTCTTGGTCGAACAGTCAGGCCATTTTTCCCAAGGGATTTAAGAGCCGGGTCAAGTACATAAGTGTTTTAGATCCGAGCAATTTGTGTTACTATGTTTCTGAAATTCTTGATGCAGGACGGGACAAACCTCTTTTTATGGTTGTTTTGGAGCATTATCCAAGTGAGGTATTCATTCATTTTTCTGCTACCAGATGCTGGGAATTGGTTAGAGACAGAGTGAATCAAGAAATTTCGAAGCAACATAAATTGGGGAGAACTAACCTTCCTCCTTTACAGCCTCCTGGGAGTTTAGATGGCTTAGAAATGTTCGGATTTACGTCACCAGCGATTGTGCAGGCCATTGAAGCATTGGATCGAAATCGAGTTTGTGGGGAGTATTGGGACTCTCGGCCCTATTCACGGCCTCCTGTACAGAGTCCACAACATTCTCAGTTAACAGAAATTGGTCGAAACTCACAAAAAACAGAAAGGATCCTAAGGGTTAATCCTTTGCCTGTTGGAATTGATACAATACTTGGGGGGTTATTTAAGAAGGCAAACCCAGAAGAACTAAATTTACTAAACACTCTCTTAAATGATAATAGTAATAATAATAGGCCAACAGTTGATCAAGGCTTGCTGACTAAACTTCTCAAGGAAGTGATTCAAGGTCATCATCCTCAATGA | 3792 | 40.64 | MGTELIRVCVEEDNDDFPSVPPGFESYISFSVEKALNNEKQDSYVPVSLPTSVPKSQSVKMETEVEVADVAKVTRSLRRKPCINYRQYDYCSDDEFDSGLLHQNFSSKPLLPKGVVRGCAQCSNCQKVVARWRPEESCRPDLEDAPVFYPTEEEFEDTLTYIANIRERAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFSTRVQRIDKLQNRNSIRKMFRIHNQMKRKRRRCNRKGADGTTLNGKIGDIGSSEAERFGFDPGPDFTLAAFQKYADDFKSQYFSNVRNDTVKGCNANVPQEREHWEPSLENIEGEYWRMVEKPSEQIEVLYGADLETGEFGSGFPKSCYQDGSTSYEDKYVKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGNYAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYKCIQNPGEFVLTFPRAYHAGFNSGLNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGVLAKAFKARVEIECARRNFLCSSSQAVKMESSFDTSSERECSSCLFDLHLSAVGCHCSPDRYACLNHAKQLCSCALGDRLFLFRYDISELNMLVEALEGKLSAVYRWARQDLGLALSSYISKEKQGGNATRNSGGTVSRDLSSKSVVNSLGDPQWKELLRQSPITSTWTSTYTTSQHKKNLFEVSATFQEAQKVISTLNVSGKELELKKPKSELKSEDCNLEATNLRFVGSQMSEEDTYALKLVEGKNRMDKTSAESVILLSDDEGSEQKKPVSIGEAESSLLKHLETSDRFTDVDSKASLCNYDENAILHTPVTDATSIGETEVKLLADRKGNNFQVSVVPTDNKHSQHINLVSSVKNEPIAAQKNNSPEAGLGLSDKVYPASMDTDFQQPQVCGSAKPNESKHGNKGTNATLHLSDTNRTTSGNLSCNQINVDRILRQKGPRIAKVVRRINCNVEPLEYGVVLSGKSWSNSQAIFPKGFKSRVKYISVLDPSNLCYYVSEILDAGRDKPLFMVVLEHYPSEVFIHFSATRCWELVRDRVNQEISKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEALDRNRVCGEYWDSRPYSRPPVQSPQHSQLTEIGRNSQKTERILRVNPLPVGIDTILGGLFKKANPEELNLLNTLLNDNSNNNRPTVDQGLLTKLLKEVIQGHHPQ | 1263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6300137 | 6308521 | + | evm.model.ptg000016l.470 | HCH10g0690 | 552763 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0690 | 1263 | MobiDBLite | consensus disorder prediction | 1174 | 1193 | - | - | |
HCH10g0690 | 1263 | Pfam | C5HC2 zinc finger | 615 | 665 | IPR004198 | - | |
HCH10g0690 | 1263 | Pfam | JmjC domain, hydroxylase | 392 | 508 | IPR003347 | - | |
HCH10g0690 | 1263 | MobiDBLite | consensus disorder prediction | 968 | 994 | - | - | |
HCH10g0690 | 1263 | Gene3D | Cupin | 130 | 509 | - | - | |
HCH10g0690 | 1263 | SUPERFAMILY | Clavaminate synthase-like | 360 | 552 | - | - | |
HCH10g0690 | 1263 | FunFam | Putative lysine-specific demethylase JMJ16 | 1028 | 1166 | - | - | |
HCH10g0690 | 1263 | ProSiteProfiles | JmjC domain profile. | 359 | 525 | IPR003347 | - | |
HCH10g0690 | 1263 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 137 | 929 | - | GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER) | |
HCH10g0690 | 1263 | SMART | cupin_9 | 359 | 525 | IPR003347 | - | |
HCH10g0690 | 1263 | Pfam | F/Y rich C-terminus | 1084 | 1168 | IPR003889 | GO:0005634(InterPro) | |
HCH10g0690 | 1263 | SMART | JmjN_1 | 144 | 185 | IPR003349 | - | |
HCH10g0690 | 1263 | SMART | fyrn_3 | 1036 | 1080 | IPR003888 | GO:0005634(InterPro) | |
HCH10g0690 | 1263 | ProSiteProfiles | JmjN domain profile. | 145 | 186 | IPR003349 | - | |
HCH10g0690 | 1263 | MobiDBLite | consensus disorder prediction | 1176 | 1193 | - | - | |
HCH10g0690 | 1263 | Gene3D | - | 1029 | 1166 | - | - | |
HCH10g0690 | 1263 | ProSiteProfiles | FYR domain FYRN motif profile. | 1022 | 1080 | IPR003888 | GO:0005634(InterPro) | |
HCH10g0690 | 1263 | ProSiteProfiles | FYR domain FYRC motif profile. | 1082 | 1172 | IPR003889 | GO:0005634(InterPro) | |
HCH10g0690 | 1263 | SMART | fyrc_3 | 1086 | 1180 | IPR003889 | GO:0005634(InterPro) | |
HCH10g0690 | 1263 | Pfam | jmjN domain | 146 | 179 | IPR003349 | - | |
HCH10g0690 | 1263 | Pfam | F/Y-rich N-terminus | 1036 | 1079 | IPR003888 | GO:0005634(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0690 | HCH-Chr10:6300137 | HCH3g0903 | HCH-Chr3:7708719 | 3.20E-227 | dispersed | |
HCH10g0690 | HCH-Chr10:6300137 | HCH6g1136 | HCH-Chr6:45921130 | 8.50E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32455 | PF02373 | JmjC | 1.70E-44 | CL0029 | HCH | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0690 | K11446 | - | csv:101208186 | 1847.4 |