Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0690 ATGGGGACAGAGCTTATACGAGTTTGTGTTGAAGAAGATAATGATGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCATTTTCAGTAGAGAAGGCGCTTAATAATGAAAAACAAGATAGTTATGTTCCTGTTAGTTTGCCAACATCTGTCCCCAAATCACAATCAGTTAAAATGGAAACTGAGGTAGAAGTTGCTGATGTCGCAAAAGTAACAAGGTCCCTCCGGCGAAAACCATGTATAAATTATAGACAGTATGATTATTGCTCCGACGATGAGTTTGATTCTGGCCTTCTTCATCAGAATTTTTCTTCAAAACCTCTTCTTCCAAAGGGGGTCGTTCGTGGATGTGCACAATGTAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCTTGCCGGCCAGACCTTGAGGATGCTCCTGTATTTTACCCAACTGAAGAGGAGTTTGAAGATACTCTGACATACATAGCAAACATACGAGAAAGAGCGGAACCATATGGGATTTGCCGTATTGTCCCCCCTTCTTCTTGGAAACCTCCATGCCCTCTGAAGCAGAAACATATTTGGGAGAGTTCCAAGTTTTCAACTCGTGTCCAAAGGATTGATAAGCTTCAAAATCGGAATTCAATTAGAAAGATGTTTAGGATTCACAATCAAATGAAGAGGAAAAGGAGAAGATGTAACCGAAAGGGGGCAGATGGTACCACATTAAATGGAAAAATAGGAGATATTGGATCTAGTGAAGCCGAAAGATTTGGGTTTGATCCCGGTCCAGATTTTACTTTAGCAGCCTTCCAAAAGTATGCAGATGACTTTAAGTCTCAATATTTTAGTAATGTACGCAATGATACTGTAAAGGGATGTAATGCAAACGTGCCCCAAGAGAGAGAGCATTGGGAACCATCTTTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCATCTGAACAAATTGAGGTGCTATATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGCGGTTTTCCAAAAAGCTGCTATCAAGATGGCTCTACATCATATGAAGACAAGTATGTAAAATCTGGATGGAACCTGAACAACTTTCCAAGGCTTCCTGGTTCAGTTCTTAGTTATGAAAGCGGTGATATATCTGGAGTTTTGGTACCATGGTTATATATTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTTAATTACATGCACTGGGGGGATCCTAAAATATGGTATGGTGTTCCAGGAAACTATGCTGGTAAGTTAGAGGAGGCTATGAGAAAGCATTTACCCGATCTTTTTGAAGAACAACCTGATTTGCTTCATAAGCTGGTTACACAACTTTCTCCCTCCATATTGAAATCCGAGGGCGTACCTGTATATAAGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCTTACCATGCAGGATTCAACAGTGGTTTGAATTGTGCAGAAGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTGTATCGTGAGCAGGGGAGAAGGACTACTATTTCTCATGATAAATTATTGCTTGGTGCTGCAAGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTTAAAAAGAATACTTTGGATAACTTGAGATGGAATAATGTATGTGGGAAAGATGGAGTCTTAGCAAAAGCGTTCAAGGCACGTGTTGAAATTGAGTGTGCTCGGAGAAATTTTCTTTGCAGTTCTTCTCAGGCAGTAAAAATGGAGAGCAGCTTTGATACCTCTAGTGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCACCTGTCTGCGGTGGGGTGTCATTGTTCCCCAGATAGATATGCGTGCTTGAATCATGCAAAACAGTTGTGTTCGTGTGCTTTGGGAGACAGATTGTTTCTCTTTCGCTATGACATCAGTGAGTTGAACATGCTTGTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATATAGATGGGCTAGGCAGGATCTTGGTCTGGCGCTCAGTTCTTACATCTCTAAAGAAAAGCAAGGAGGCAATGCGACTCGTAATTCTGGAGGAACAGTATCTAGAGATTTGAGTTCCAAATCTGTAGTTAATTCCCTTGGGGATCCTCAATGGAAAGAATTATTAAGACAATCCCCAATAACATCAACTTGGACCTCTACCTACACCACTTCTCAGCATAAAAAGAACTTATTTGAAGTTTCAGCTACTTTCCAGGAAGCCCAGAAGGTGATTTCCACACTTAATGTATCTGGGAAGGAACTTGAGTTGAAAAAACCTAAATCTGAGTTGAAAAGTGAAGACTGCAATCTTGAGGCAACCAATTTAAGGTTTGTAGGCTCTCAGATGTCTGAAGAGGACACATATGCTCTGAAGCTGGTTGAAGGGAAAAACAGAATGGATAAAACATCTGCTGAAAGTGTCATACTTCTTAGTGATGATGAAGGTAGTGAGCAGAAGAAGCCAGTTTCAATTGGAGAAGCTGAAAGTTCATTGTTAAAGCATTTGGAAACTTCTGATAGGTTTACAGATGTTGATTCTAAGGCTAGCCTTTGCAACTATGATGAAAATGCAATCTTACACACCCCGGTGACTGATGCAACTAGCATAGGAGAAACAGAGGTCAAATTGTTGGCTGATAGAAAAGGGAATAATTTCCAAGTCAGTGTTGTACCAACAGATAATAAACATTCTCAACATATTAACTTAGTATCATCAGTTAAAAATGAACCAATTGCTGCTCAGAAAAACAATTCTCCAGAGGCGGGACTAGGTCTCAGTGATAAAGTATATCCAGCTTCAATGGACACTGATTTTCAGCAACCACAGGTATGTGGCTCTGCAAAACCAAATGAGAGCAAGCATGGAAATAAGGGGACAAATGCTACCTTACATTTATCAGACACCAATAGAACTACTTCTGGAAATTTATCTTGCAATCAAATTAATGTGGACAGAATCTTAAGGCAAAAGGGTCCTCGAATAGCAAAAGTAGTACGGAGGATCAACTGCAATGTAGAGCCTTTAGAATATGGAGTCGTGCTTTCAGGAAAGTCTTGGTCGAACAGTCAGGCCATTTTTCCCAAGGGATTTAAGAGCCGGGTCAAGTACATAAGTGTTTTAGATCCGAGCAATTTGTGTTACTATGTTTCTGAAATTCTTGATGCAGGACGGGACAAACCTCTTTTTATGGTTGTTTTGGAGCATTATCCAAGTGAGGTATTCATTCATTTTTCTGCTACCAGATGCTGGGAATTGGTTAGAGACAGAGTGAATCAAGAAATTTCGAAGCAACATAAATTGGGGAGAACTAACCTTCCTCCTTTACAGCCTCCTGGGAGTTTAGATGGCTTAGAAATGTTCGGATTTACGTCACCAGCGATTGTGCAGGCCATTGAAGCATTGGATCGAAATCGAGTTTGTGGGGAGTATTGGGACTCTCGGCCCTATTCACGGCCTCCTGTACAGAGTCCACAACATTCTCAGTTAACAGAAATTGGTCGAAACTCACAAAAAACAGAAAGGATCCTAAGGGTTAATCCTTTGCCTGTTGGAATTGATACAATACTTGGGGGGTTATTTAAGAAGGCAAACCCAGAAGAACTAAATTTACTAAACACTCTCTTAAATGATAATAGTAATAATAATAGGCCAACAGTTGATCAAGGCTTGCTGACTAAACTTCTCAAGGAAGTGATTCAAGGTCATCATCCTCAATGA 3792 40.64 MGTELIRVCVEEDNDDFPSVPPGFESYISFSVEKALNNEKQDSYVPVSLPTSVPKSQSVKMETEVEVADVAKVTRSLRRKPCINYRQYDYCSDDEFDSGLLHQNFSSKPLLPKGVVRGCAQCSNCQKVVARWRPEESCRPDLEDAPVFYPTEEEFEDTLTYIANIRERAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFSTRVQRIDKLQNRNSIRKMFRIHNQMKRKRRRCNRKGADGTTLNGKIGDIGSSEAERFGFDPGPDFTLAAFQKYADDFKSQYFSNVRNDTVKGCNANVPQEREHWEPSLENIEGEYWRMVEKPSEQIEVLYGADLETGEFGSGFPKSCYQDGSTSYEDKYVKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGNYAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYKCIQNPGEFVLTFPRAYHAGFNSGLNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGVLAKAFKARVEIECARRNFLCSSSQAVKMESSFDTSSERECSSCLFDLHLSAVGCHCSPDRYACLNHAKQLCSCALGDRLFLFRYDISELNMLVEALEGKLSAVYRWARQDLGLALSSYISKEKQGGNATRNSGGTVSRDLSSKSVVNSLGDPQWKELLRQSPITSTWTSTYTTSQHKKNLFEVSATFQEAQKVISTLNVSGKELELKKPKSELKSEDCNLEATNLRFVGSQMSEEDTYALKLVEGKNRMDKTSAESVILLSDDEGSEQKKPVSIGEAESSLLKHLETSDRFTDVDSKASLCNYDENAILHTPVTDATSIGETEVKLLADRKGNNFQVSVVPTDNKHSQHINLVSSVKNEPIAAQKNNSPEAGLGLSDKVYPASMDTDFQQPQVCGSAKPNESKHGNKGTNATLHLSDTNRTTSGNLSCNQINVDRILRQKGPRIAKVVRRINCNVEPLEYGVVLSGKSWSNSQAIFPKGFKSRVKYISVLDPSNLCYYVSEILDAGRDKPLFMVVLEHYPSEVFIHFSATRCWELVRDRVNQEISKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEALDRNRVCGEYWDSRPYSRPPVQSPQHSQLTEIGRNSQKTERILRVNPLPVGIDTILGGLFKKANPEELNLLNTLLNDNSNNNRPTVDQGLLTKLLKEVIQGHHPQ 1263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6300137 6308521 + evm.model.ptg000016l.470 HCH10g0690 552763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0690 1263 MobiDBLite consensus disorder prediction 1174 1193 - -
HCH10g0690 1263 Pfam C5HC2 zinc finger 615 665 IPR004198 -
HCH10g0690 1263 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
HCH10g0690 1263 MobiDBLite consensus disorder prediction 968 994 - -
HCH10g0690 1263 Gene3D Cupin 130 509 - -
HCH10g0690 1263 SUPERFAMILY Clavaminate synthase-like 360 552 - -
HCH10g0690 1263 FunFam Putative lysine-specific demethylase JMJ16 1028 1166 - -
HCH10g0690 1263 ProSiteProfiles JmjC domain profile. 359 525 IPR003347 -
HCH10g0690 1263 PANTHER LYSINE-SPECIFIC DEMETHYLASE 137 929 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
HCH10g0690 1263 SMART cupin_9 359 525 IPR003347 -
HCH10g0690 1263 Pfam F/Y rich C-terminus 1084 1168 IPR003889 GO:0005634(InterPro)
HCH10g0690 1263 SMART JmjN_1 144 185 IPR003349 -
HCH10g0690 1263 SMART fyrn_3 1036 1080 IPR003888 GO:0005634(InterPro)
HCH10g0690 1263 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
HCH10g0690 1263 MobiDBLite consensus disorder prediction 1176 1193 - -
HCH10g0690 1263 Gene3D - 1029 1166 - -
HCH10g0690 1263 ProSiteProfiles FYR domain FYRN motif profile. 1022 1080 IPR003888 GO:0005634(InterPro)
HCH10g0690 1263 ProSiteProfiles FYR domain FYRC motif profile. 1082 1172 IPR003889 GO:0005634(InterPro)
HCH10g0690 1263 SMART fyrc_3 1086 1180 IPR003889 GO:0005634(InterPro)
HCH10g0690 1263 Pfam jmjN domain 146 179 IPR003349 -
HCH10g0690 1263 Pfam F/Y-rich N-terminus 1036 1079 IPR003888 GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0690 HCH-Chr10:6300137 HCH3g0903 HCH-Chr3:7708719 3.20E-227 dispersed
HCH10g0690 HCH-Chr10:6300137 HCH6g1136 HCH-Chr6:45921130 8.50E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32455 PF02373 JmjC 1.70E-44 CL0029 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0690 K11446 - csv:101208186 1847.4