Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0690 ATGGGGACAGAGCTTATACGAGTTTGTGTTGAAGAAGATAATGATGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCATTTTCAGTAGAGAAGGCGCTTAATAATGAAAAACAAGATAGTTATGTTCCTGTTAGTTTGCCAACATCTGTCCCCAAATCACAATCAGTTAAAATGGAAACTGAGGTAGAAGTTGCTGATGTCGCAAAAGTAACAAGGTCCCTCCGGCGAAAACCATGTATAAATTATAGACAGTATGATTATTGCTCCGACGATGAGTTTGATTCTGGCCTTCTTCATCAGAATTTTTCTTCAAAACCTCTTCTTCCAAAGGGGGTCGTTCGTGGATGTGCACAATGTAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCTTGCCGGCCAGACCTTGAGGATGCTCCTGTATTTTACCCAACTGAAGAGGAGTTTGAAGATACTCTGACATACATAGCAAACATACGAGAAAGAGCGGAACCATATGGGATTTGCCGTATTGTCCCCCCTTCTTCTTGGAAACCTCCATGCCCTCTGAAGCAGAAACATATTTGGGAGAGTTCCAAGTTTTCAACTCGTGTCCAAAGGATTGATAAGCTTCAAAATCGGAATTCAATTAGAAAGATGTTTAGGATTCACAATCAAATGAAGAGGAAAAGGAGAAGATGTAACCGAAAGGGGGCAGATGGTACCACATTAAATGGAAAAATAGGAGATATTGGATCTAGTGAAGCCGAAAGATTTGGGTTTGATCCCGGTCCAGATTTTACTTTAGCAGCCTTCCAAAAGTATGCAGATGACTTTAAGTCTCAATATTTTAGTAATGTACGCAATGATACTGTAAAGGGATGTAATGCAAACGTGCCCCAAGAGAGAGAGCATTGGGAACCATCTTTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCATCTGAACAAATTGAGGTGCTATATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGCGGTTTTCCAAAAAGCTGCTATCAAGATGGCTCTACATCATATGAAGACAAGTATGTAAAATCTGGATGGAACCTGAACAACTTTCCAAGGCTTCCTGGTTCAGTTCTTAGTTATGAAAGCGGTGATATATCTGGAGTTTTGGTACCATGGTTATATATTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTTAATTACATGCACTGGGGGGATCCTAAAATATGGTATGGTGTTCCAGGAAACTATGCTGGTAAGTTAGAGGAGGCTATGAGAAAGCATTTACCCGATCTTTTTGAAGAACAACCTGATTTGCTTCATAAGCTGGTTACACAACTTTCTCCCTCCATATTGAAATCCGAGGGCGTACCTGTATATAAGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCTTACCATGCAGGATTCAACAGTGGTTTGAATTGTGCAGAAGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTGTATCGTGAGCAGGGGAGAAGGACTACTATTTCTCATGATAAATTATTGCTTGGTGCTGCAAGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTTAAAAAGAATACTTTGGATAACTTGAGATGGAATAATGTATGTGGGAAAGATGGAGTCTTAGCAAAAGCGTTCAAGGCACGTGTTGAAATTGAGTGTGCTCGGAGAAATTTTCTTTGCAGTTCTTCTCAGGCAGTAAAAATGGAGAGCAGCTTTGATACCTCTAGTGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCACCTGTCTGCGGTGGGGTGTCATTGTTCCCCAGATAGATATGCGTGCTTGAATCATGCAAAACAGTTGTGTTCGTGTGCTTTGGGAGACAGATTGTTTCTCTTTCGCTATGACATCAGTGAGTTGAACATGCTTGTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATATAGATGGGCTAGGCAGGATCTTGGTCTGGCGCTCAGTTCTTACATCTCTAAAGAAAAGCAAGGAGGCAATGCGACTCGTAATTCTGGAGGAACAGTATCTAGAGATTTGAGTTCCAAATCTGTAGTTAATTCCCTTGGGGATCCTCAATGGAAAGAATTATTAAGACAATCCCCAATAACATCAACTTGGACCTCTACCTACACCACTTCTCAGCATAAAAAGAACTTATTTGAAGTTTCAGCTACTTTCCAGGAAGCCCAGAAGGTGATTTCCACACTTAATGTATCTGGGAAGGAACTTGAGTTGAAAAAACCTAAATCTGAGTTGAAAAGTGAAGACTGCAATCTTGAGGCAACCAATTTAAGGTTTGTAGGCTCTCAGATGTCTGAAGAGGACACATATGCTCTGAAGCTGGTTGAAGGGAAAAACAGAATGGATAAAACATCTGCTGAAAGTGTCATACTTCTTAGTGATGATGAAGGTAGTGAGCAGAAGAAGCCAGTTTCAATTGGAGAAGCTGAAAGTTCATTGTTAAAGCATTTGGAAACTTCTGATAGGTTTACAGATGTTGATTCTAAGGCTAGCCTTTGCAACTATGATGAAAATGCAATCTTACACACCCCGGTGACTGATGCAACTAGCATAGGAGAAACAGAGGTCAAATTGTTGGCTGATAGAAAAGGGAATAATTTCCAAGTCAGTGTTGTACCAACAGATAATAAACATTCTCAACATATTAACTTAGTATCATCAGTTAAAAATGAACCAATTGCTGCTCAGAAAAACAATTCTCCAGAGGCGGGACTAGGTCTCAGTGATAAAGTATATCCAGCTTCAATGGACACTGATTTTCAGCAACCACAGGTATGTGGCTCTGCAAAACCAAATGAGAGCAAGCATGGAAATAAGGGGACAAATGCTACCTTACATTTATCAGACACCAATAGAACTACTTCTGGAAATTTATCTTGCAATCAAATTAATGTGGACAGAATCTTAAGGCAAAAGGGTCCTCGAATAGCAAAAGTAGTACGGAGGATCAACTGCAATGTAGAGCCTTTAGAATATGGAGTCGTGCTTTCAGGAAAGTCTTGGTCGAACAGTCAGGCCATTTTTCCCAAGGGATTTAAGAGCCGGGTCAAGTACATAAGTGTTTTAGATCCGAGCAATTTGTGTTACTATGTTTCTGAAATTCTTGATGCAGGACGGGACAAACCTCTTTTTATGGTTGTTTTGGAGCATTATCCAAGTGAGGTATTCATTCATTTTTCTGCTACCAGATGCTGGGAATTGGTTAGAGACAGAGTGAATCAAGAAATTTCGAAGCAACATAAATTGGGGAGAACTAACCTTCCTCCTTTACAGCCTCCTGGGAGTTTAGATGGCTTAGAAATGTTCGGATTTACGTCACCAGCGATTGTGCAGGCCATTGAAGCATTGGATCGAAATCGAGTTTGTGGGGAGTATTGGGACTCTCGGCCCTATTCACGGCCTCCTGTACAGAGTCCACAACATTCTCAGTTAACAGAAATTGGTCGAAACTCACAAAAAACAGAAAGGATCCTAAGGGTTAATCCTTTGCCTGTTGGAATTGATACAATACTTGGGGGGTTATTTAAGAAGGCAAACCCAGAAGAACTAAATTTACTAAACACTCTCTTAAATGATAATAGTAATAATAATAGGCCAACAGTTGATCAAGGCTTGCTGACTAAACTTCTCAAGGAAGTGATTCAAGGTCATCATCCTCAATGA 3792 40.64 MGTELIRVCVEEDNDDFPSVPPGFESYISFSVEKALNNEKQDSYVPVSLPTSVPKSQSVKMETEVEVADVAKVTRSLRRKPCINYRQYDYCSDDEFDSGLLHQNFSSKPLLPKGVVRGCAQCSNCQKVVARWRPEESCRPDLEDAPVFYPTEEEFEDTLTYIANIRERAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFSTRVQRIDKLQNRNSIRKMFRIHNQMKRKRRRCNRKGADGTTLNGKIGDIGSSEAERFGFDPGPDFTLAAFQKYADDFKSQYFSNVRNDTVKGCNANVPQEREHWEPSLENIEGEYWRMVEKPSEQIEVLYGADLETGEFGSGFPKSCYQDGSTSYEDKYVKSGWNLNNFPRLPGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGNYAGKLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYKCIQNPGEFVLTFPRAYHAGFNSGLNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNNVCGKDGVLAKAFKARVEIECARRNFLCSSSQAVKMESSFDTSSERECSSCLFDLHLSAVGCHCSPDRYACLNHAKQLCSCALGDRLFLFRYDISELNMLVEALEGKLSAVYRWARQDLGLALSSYISKEKQGGNATRNSGGTVSRDLSSKSVVNSLGDPQWKELLRQSPITSTWTSTYTTSQHKKNLFEVSATFQEAQKVISTLNVSGKELELKKPKSELKSEDCNLEATNLRFVGSQMSEEDTYALKLVEGKNRMDKTSAESVILLSDDEGSEQKKPVSIGEAESSLLKHLETSDRFTDVDSKASLCNYDENAILHTPVTDATSIGETEVKLLADRKGNNFQVSVVPTDNKHSQHINLVSSVKNEPIAAQKNNSPEAGLGLSDKVYPASMDTDFQQPQVCGSAKPNESKHGNKGTNATLHLSDTNRTTSGNLSCNQINVDRILRQKGPRIAKVVRRINCNVEPLEYGVVLSGKSWSNSQAIFPKGFKSRVKYISVLDPSNLCYYVSEILDAGRDKPLFMVVLEHYPSEVFIHFSATRCWELVRDRVNQEISKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEALDRNRVCGEYWDSRPYSRPPVQSPQHSQLTEIGRNSQKTERILRVNPLPVGIDTILGGLFKKANPEELNLLNTLLNDNSNNNRPTVDQGLLTKLLKEVIQGHHPQ 1263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6300137 6308521 + evm.model.ptg000016l.470 HCH10g0690 552763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0690 1263 MobiDBLite consensus disorder prediction 1174 1193 - -
HCH10g0690 1263 Pfam C5HC2 zinc finger 615 665 IPR004198 -
HCH10g0690 1263 Pfam JmjC domain, hydroxylase 392 508 IPR003347 -
HCH10g0690 1263 MobiDBLite consensus disorder prediction 968 994 - -
HCH10g0690 1263 Gene3D Cupin 130 509 - -
HCH10g0690 1263 SUPERFAMILY Clavaminate synthase-like 360 552 - -
HCH10g0690 1263 FunFam Putative lysine-specific demethylase JMJ16 1028 1166 - -
HCH10g0690 1263 ProSiteProfiles JmjC domain profile. 359 525 IPR003347 -
HCH10g0690 1263 PANTHER LYSINE-SPECIFIC DEMETHYLASE 137 929 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
HCH10g0690 1263 SMART cupin_9 359 525 IPR003347 -
HCH10g0690 1263 Pfam F/Y rich C-terminus 1084 1168 IPR003889 GO:0005634(InterPro)
HCH10g0690 1263 SMART JmjN_1 144 185 IPR003349 -
HCH10g0690 1263 SMART fyrn_3 1036 1080 IPR003888 GO:0005634(InterPro)
HCH10g0690 1263 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
HCH10g0690 1263 MobiDBLite consensus disorder prediction 1176 1193 - -
HCH10g0690 1263 Gene3D - 1029 1166 - -
HCH10g0690 1263 ProSiteProfiles FYR domain FYRN motif profile. 1022 1080 IPR003888 GO:0005634(InterPro)
HCH10g0690 1263 ProSiteProfiles FYR domain FYRC motif profile. 1082 1172 IPR003889 GO:0005634(InterPro)
HCH10g0690 1263 SMART fyrc_3 1086 1180 IPR003889 GO:0005634(InterPro)
HCH10g0690 1263 Pfam jmjN domain 146 179 IPR003349 -
HCH10g0690 1263 Pfam F/Y-rich N-terminus 1036 1079 IPR003888 GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0690 K11446 - - csv:101208186 1847.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0690 HCH-Chr10:6300137 HCH3g0903 HCH-Chr3:7708719 3.20E-227 dispersed
HCH10g0690 HCH-Chr10:6300137 HCH6g1136 HCH-Chr6:45921130 8.50E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0690 . 1 1258 JUMONJI Transcription Factor Family AT1G08620 55.0 0.0e+00 1273.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32455 PF02373 JmjC 1.70E-44 CL0029 HCH TR