Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0695 ATGGAACCCAATGAAAACCAGCTCAACTCCTACTTCCACCATCTCCACCACCATCACCATCAACAACACCAACACCACCATCAAAGTCCCACCACTTCTCCTACCAATGGCCTCTTACCCGCAACCCACCACATGTCTTCCACCACCGCCACCGCCACAGCCACCGTAGACGGCGGACCTCACATCGTTTATCCTCACTCTGCACCGTCCGCGGCGGCTCCCTTAGAGCCTGCTCGGAGGAAAAGAGGAAGACCCAGAAAATATGGCACTCCTGAAGAAGCTTTAGCTGCAAAGAAAGCTGCTACGGCGTCGTCTCACTCTTCGTCTTCTAAGGCTAAGAAAGAACATCGTGCTTCTTCTCTTAATGCTGCTTCTCCTTCTTCTCCTTCCTTTTCTGCCTCTACCAAGAAATCCCAGTTCCTTTCTCTTGGTGATCCAGGCCACGGTTTTGCGCCACATGTGATTAATGTTGCAGCTGGTGAGGATGTTGGCCAGAAAATTATGCTTTTCTTGCAACAATGTAAGCGGGAAATCTGTATCCTTTCTGCATCTGGTTCAATCTCTAATGCATCTCTCCGTCAGCCGGCTACATCAGGAGGCAACATTACATACGAGGGTCGTTTTGAGATTGTTTCATTGAGCGGATCTTACGTAAATGGCACTGGAGGAAAGACTGGTGGTCTTAGTGTATGTCTATCTAGTGCTGATGGTCATATCGTAGGAGGGGGAGTTGGTGGACCATTGAAGGCTGCTGGCCCCGTACAGGTAATTATTGGCACATTTGTAGTGGATTCGAAGAAGGAAGTTGGTGGTGGTGGTGTGAAAGGTGATGCCTCTGCTGGAAAGTTGCCCTCACCTGTTGGTGGGACGTCGATATCAGGTCTACGCTATGGCTCGACAGTTGACTCATCTGGAGGCAATCACATCAGGGGGAATGATGATCATCAAGGTATTGGGGAGAGTCATTTCTTGCTTCAGTCCCGGGGCGTAAATCTGACATCTCCACGGCCCACAGACTGGAGGACTTGTCTGGATACCACAAACGCTCCTGCTTATGATTTTTCAGGAAGAACAGGCCATCATCAATCTCCAGAAAATGGAGATTACGATCAGATTCCCGATTAA 1125 49.42 MEPNENQLNSYFHHLHHHHHQQHQHHHQSPTTSPTNGLLPATHHMSSTTATATATVDGGPHIVYPHSAPSAAAPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKEHRASSLNAASPSSPSFSASTKKSQFLSLGDPGHGFAPHVINVAAGEDVGQKIMLFLQQCKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVNGTGGKTGGLSVCLSSADGHIVGGGVGGPLKAAGPVQVIIGTFVVDSKKEVGGGGVKGDASAGKLPSPVGGTSISGLRYGSTVDSSGGNHIRGNDDHQGIGESHFLLQSRGVNLTSPRPTDWRTCLDTTNAPAYDFSGRTGHHQSPENGDYDQIPD 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6356803 6365443 + evm.model.ptg000016l.465 HCH10g0695 552768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0695 374 MobiDBLite consensus disorder prediction 120 134 - -
HCH10g0695 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 277 IPR039605 GO:0003680(InterPro)
HCH10g0695 374 MobiDBLite consensus disorder prediction 353 374 - -
HCH10g0695 374 MobiDBLite consensus disorder prediction 27 55 - -
HCH10g0695 374 CDD DUF296 152 261 IPR005175 -
HCH10g0695 374 ProSiteProfiles PPC domain profile profile. 144 287 IPR005175 -
HCH10g0695 374 MobiDBLite consensus disorder prediction 16 134 - -
HCH10g0695 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 262 - -
HCH10g0695 374 Gene3D - 152 275 - -
HCH10g0695 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 261 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0695 HCH-Chr10:6356803 HCH4g0865 HCH-Chr4:5539854 1.30E-40 dispersed
HCH10g0695 HCH-Chr10:6356803 HCH10g0700 HCH-Chr10:6411306 1.90E-18 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0695 - - - 0.0