Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0700 ATGGCAAACCGGTGGTGGACCGGAGCTCAGCTGGGTCTGCCCGGAATTGATCATGCCTCAACTAGTTCATCAGCCATGAGGAAACCAGATCTGGGGATCTCCATGAATGATAACGGTGGAACGGTGAACAGCGGCGGTGGAATCGATGAAGACGATAGAGACAACGGAGGCGATGAGCCTAAAGAAGGCGCGGTGGAAGCACCGAATCGACGGCCCCGTGGCCGTCCTCCGGGGTCTAAAAATAAGCCAAAACCACCCATCTTTGTCACTAGGGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAAATTTCTAATGGAGCAGATATAGCAGAAAGTGTGGCTCAATTCGCCAGAAGGAGGCAGAGAGGAGTTTCCGTTCTTAACGGCAGCGGCACGGTGACGAATGTGACGCTCCGGCAACCGTCTGCTCCGGGTGCAGTCCTTTCCCTCCATGGTCGGTTTGAGATTCTTTCCTTGACAGGAACTTTCCTTCCTGGACCAGCCCCACCAGGTTCCACTGGACTAACCATATACTTAGCCGGCGGTCAAGGACAAGTAGTCGGTGGCAGTGTAGTCGGTCCGCTCACCGCTGCAGGGCCAGTGATGGTGATCGCCGCAACATTTTCCAATGCAACATATGAAAGATTACCCTTGGAAGATGAAGAAGAAGCAGGTGGAGCAGCAGCAGGAGGTGGTGGCAACGGCACAGGCGGTGATGGTTCACCGCAAGGCATCGGTGGAGGTGGCGGTGGGGGGCAACATCAAGGTGGGGTTGCAGATCCTTCATCCATGCCTCCACTGTATAATTTGCCACCAAATTTGATTTCCAATGGAGGGCAGATGAACCAGCAGGAGGCCTATTCATGGGCTCATGGTGGCAGACCATCTTATTAG 897 53.96 MANRWWTGAQLGLPGIDHASTSSSAMRKPDLGISMNDNGGTVNSGGGIDEDDRDNGGDEPKEGAVEAPNRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQRGVSVLNGSGTVTNVTLRQPSAPGAVLSLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEDEEEAGGAAAGGGGNGTGGDGSPQGIGGGGGGGQHQGGVADPSSMPPLYNLPPNLISNGGQMNQQEAYSWAHGGRPSY 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6411306 6412202 - evm.model.ptg000016l.460 HCH10g0700 552773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0700 298 PIRSF ESCAROLA 13 298 IPR014476 GO:0003680(InterPro)
HCH10g0700 298 Gene3D - 98 225 - -
HCH10g0700 298 MobiDBLite consensus disorder prediction 12 94 - -
HCH10g0700 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 223 - -
HCH10g0700 298 MobiDBLite consensus disorder prediction 270 290 - -
HCH10g0700 298 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
HCH10g0700 298 CDD DUF296 98 181 IPR005175 -
HCH10g0700 298 MobiDBLite consensus disorder prediction 222 298 - -
HCH10g0700 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 298 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH10g0700 298 FunFam AT-hook motif nuclear-localized protein 97 224 - -
HCH10g0700 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 210 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0700 HCH-Chr10:6411306 HCH5g0428 HCH-Chr5:2860572 1.10E-66 dispersed
HCH10g0695 HCH-Chr10:6356803 HCH10g0700 HCH-Chr10:6411306 1.90E-18 proximal
HCH10g0700 HCH-Chr10:6411306 HCH7g1306 HCH-Chr7:46002643 2.30E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0700 - - - 0.0