Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0718 ATGAATGCCAACACCAATGTAATGTTATCCATTCTCTACGTACTTTTGTTCTTGAATTGGATTCATGTTTCATATGGCGAAGAAGAAGCGCAGGCATTGTTGTTGCGGTGTGGTTCGAAGGAAGTGGGGACGGATGAAGACGGGAGAAAATGGGGACCGGATTCGAAATTCATCAGTTCGAGCAGTTCGGTGTTGCAACCGGCTGGATTCCAAGACCCTTCGGTGACGTCTGCCGTTCCTTATATGGATGCAAGAATCTTCCCATCTGAGGCTTCGTATAAGTTCCCCATAAAACCGGGTAATCGATATTGGCTTAGGCTGCATTTTTATCCTTCCACATATGGTACATATGATGCTGTGAATTCATTCTTCACTGTGATTGCAAACGATCTTACCCTTGTGAAAAACTTTAGTGCCTACCTTACATGTCAAGCCTATACACAAGCTTATATTGTAAGGGAATTTACAATTGCACCTTTGGAATCTGATGTATTGACCCTCACCTTTAAGCCGGTTACTGGATTTGCTTATATCAATGGTATTGAGTTGGCTGAAATGCCGGAAATTTTCGATCAAGCGATAATAGCGGGGTCAGTTGAACAAATGATGGATTTCAAGAGCTCAAATATGCAGACCATGTTTAGATTGAATGTTGGAGGGAAGTACATTTCACCAGCCAATGACTCTGGTCTTAGTAGGGCATGGTATGATGATTATCCTTATGTTTATGGTGCTTCTGATGGGATTACACTTTCGGCGTCTACAAAGGTTGTGATTGATTACCAAACTTTGCCCAACTATACAGCTCCGACGGAAGTTTACGCGTCGTCAAGATCGATGGGGAGTGATAAGTCGCTGAATGAAAATTACAACCTCACATGGGTGTTCCCTAATATTGATCCTGGATTCATGTATCTTCTTAGGTTACACTTTTGTGACTTCACTTTGAGTAGACCAAATCAAGTGGTTTTTACAATCTACATTAACAATCAAACGGCTCAAAACGCAGCAGATGTTGTTGCTTGGGCAGGAGGAAGAGGGAAACCAACATTCAGGGATTATGTCATAGTAACTAAAGATGGCTCACAAAGTCAAAAACTTTGGTTGGCATTGCACCCCCAGCTTGCATTAACCCCGGAATATGTCGATGCGATGTTGAACGGGGTAGAGATATTCAAAGTTGAAGCAGCGAAAAACTTGGCTGGGCTTAATCCAGTATCTTCAGACTTCAAAATGAAGGTTGAGGCTCAATCAGCAAGGGCTTTTCAGCCAAAAGACAATAATGCTCAAGTGATTGGTGGAGCGGCCGGAGGAGCTGCAGCGTTTGTTGTAGTGGCATTATGCTTTGCTGTTTACCAAAGGAAGAACAGAATTCCGGGAACAGATTCACACACAACTAGTTGGTTGCCAATCTATGGAAATTCACATTCAAGTGGTAGCAAATCAACAACCTCTGGGAAGAGTACTGCTAGTAATTTGGCTCAGGGTCTCGCACGCCATTTTTCGATATCAGAAATATTACAAGCTACTAAAAACTTTAGTGAGTCTAATGTCATTGGTGTTGGAGGTTTTGGGAAGGTGTACAAGGGAACTATTGATGGAGGGACCAAAGTGGCCATTAAAAGGTCTAACCCATCCTCTGAACAAGGAGTTCATGAATTCCTTACTGAAATTGATCTGCTTTCCAAGCTTAGACACAAACATTTAGTGTCTTTGATTGGTTTCTGTGATGAAGAGAATGAGATGTGTTTGGTTTATGATTATATGGGGAAAGGAACTATGAGGGAGCATCTTTATAAGACGAACAAACCTCGTCTCTCATGGAAGCAAAGACTCGAGATTTGCATTGGAGCAGCTAGAGGACTTCACTACCTTCACACAGGAGCACAATACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGATAATTGGGTTGCCAAGGTATCGGATTTCGGACTCTCAAAAACCGGTCCAAACATGGCTAACGGTCACGTTAGCACGGTAGTTAAAGGTAGCTTCGGCTATTTAGACCCGGAGTACTTCCGAAGGCAACAACTGACTGAAAAATCTGATGTCTATTCTTTTGGGGTTGTCCTCTTTGAAGTCTTGTGTGGAAGACCTGCTTTAAATCCAAGCCTTCCGAAGGAACAGGTTAGTCTTGCTGATTGGGCCTTACATTGCAAACGCAAAGGAATTATTGAGGACCTCATTGATCCTCAACTCAAAGGGAAAATCACCCCAGAATGCTTGAAGAAGTTTGCAGATGCAGCTGAAAAATGCTTAGACGACCACGGAGCCGAGCGACCTTCCATGGGTGATGTGTTGTGGAACCTTGAATTTGCTCTCCAACTGCAAGAAAGTGCTGATGGTTCCGCCCACGGCTCAAGCACCACGCGTCCAGAGGACGATGAAGATTGTCACAAAAACCAGGCCATGTCTATGCATTATAGCAACCTTGATCTTGAAAATGAGCACGAGTTAAGTCAAGAATCCAATGACCAAAACAGTGATGCAGTCTTCTCTCAACTTGTCAATCCTAAAGGCCGATGA 2565 43.0 MNANTNVMLSILYVLLFLNWIHVSYGEEEAQALLLRCGSKEVGTDEDGRKWGPDSKFISSSSSVLQPAGFQDPSVTSAVPYMDARIFPSEASYKFPIKPGNRYWLRLHFYPSTYGTYDAVNSFFTVIANDLTLVKNFSAYLTCQAYTQAYIVREFTIAPLESDVLTLTFKPVTGFAYINGIELAEMPEIFDQAIIAGSVEQMMDFKSSNMQTMFRLNVGGKYISPANDSGLSRAWYDDYPYVYGASDGITLSASTKVVIDYQTLPNYTAPTEVYASSRSMGSDKSLNENYNLTWVFPNIDPGFMYLLRLHFCDFTLSRPNQVVFTIYINNQTAQNAADVVAWAGGRGKPTFRDYVIVTKDGSQSQKLWLALHPQLALTPEYVDAMLNGVEIFKVEAAKNLAGLNPVSSDFKMKVEAQSARAFQPKDNNAQVIGGAAGGAAAFVVVALCFAVYQRKNRIPGTDSHTTSWLPIYGNSHSSGSKSTTSGKSTASNLAQGLARHFSISEILQATKNFSESNVIGVGGFGKVYKGTIDGGTKVAIKRSNPSSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLVYDYMGKGTMREHLYKTNKPRLSWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDDNWVAKVSDFGLSKTGPNMANGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCGRPALNPSLPKEQVSLADWALHCKRKGIIEDLIDPQLKGKITPECLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGSAHGSSTTRPEDDEDCHKNQAMSMHYSNLDLENEHELSQESNDQNSDAVFSQLVNPKGR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6677720 6680284 - evm.model.ptg000016l.442 HCH10g0718 552791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0718 854 MobiDBLite consensus disorder prediction 801 815 - -
HCH10g0718 854 FunFam FERONIA receptor-like kinase 32 187 - -
HCH10g0718 854 FunFam receptor-like protein kinase FERONIA 475 588 - -
HCH10g0718 854 ProSiteProfiles Protein kinase domain profile. 513 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0718 854 Gene3D Transferase(Phosphotransferase) domain 1 589 804 - -
HCH10g0718 854 FunFam FERONIA receptor-like kinase 208 395 - -
HCH10g0718 854 MobiDBLite consensus disorder prediction 792 854 - -
HCH10g0718 854 CDD STKc_IRAK 519 784 - -
HCH10g0718 854 FunFam Receptor-like protein kinase FERONIA 589 801 - -
HCH10g0718 854 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524(InterPro)
HCH10g0718 854 Gene3D Phosphorylase Kinase; domain 1 474 588 - -
HCH10g0718 854 SUPERFAMILY Protein kinase-like (PK-like) 498 781 IPR011009 -
HCH10g0718 854 Pfam Malectin-like domain 37 394 IPR024788 -
HCH10g0718 854 SMART serkin_6 513 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0718 854 Gene3D - 32 187 - -
HCH10g0718 854 Gene3D - 208 396 - -
HCH10g0718 854 Pfam Protein tyrosine and serine/threonine kinase 516 780 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0718 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0718 854 PANTHER OS07G0166700 PROTEIN 501 791 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0718 HCH-Chr10:6677720 HCH12g1105 HCH-Chr12:8576738 5.20E-189 dispersed
HCH10g0718 HCH-Chr10:6677720 HCH9g0843 HCH-Chr9:5967702 3.20E-247 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80994 PF12819 Malectin_like 3.80E-35 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0718 - - - 0.0