Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0771 ATGAAAAAATCCTCAAAACCCACTTCCTCTTTCCCACTCCCATTCTCTAAATCCACTTCCTTTCTCTTCTCCATGTCTTCCCTTTTCCTCTTCTCCCTCCTCTCTCTCTTCCATTTCCTCTCTCTCTCCTCGTCCTCCTCCGCCCATCATCACCACCATCACCACCACCACCACAACGACAATAACCCATCAACCGATTTATCCAGCCCGACCGGACCCGACCCCCACCACCAAGCATGTGAAGCAACTCGTTTCCCAGATCAATGCATTTCCTCTCTCACTCATCACCTCCCTCCAAAACCAACCCCACTTCAAATAATCCAATCCGCCATCGGAGTCTCGTCGGAGAATCTCGAGACTGCGATTTCGATGGTCAAAGACATTCTAGACTCTTCCGCTCACAATCCCAATCGTACGACCGCCGCCGTCAACTGCCTCGATCACCTCCGTAACTCCCATTATCGAATCTCCCTCACCAATGACGCTCTCCCACGTGGCCGAATCAAGGACGCTAGATCGTGGATGAGCGCCTCTCTCCTTTACCATTACGATTGCTGGTCCTCTCTCAAATACGCCAACGACACTCAATTAGTCAACAAAACCATGTCGTTCCTCGATTCCCTCATCGGATTCTCCAGCAACGCCCTTTCCATGGTCGTGAATTACGATATTTACGGAAACGACACTGGCTCCTGGGCCCCACCCAAGACGGAGCGTGACGGAGTTTGGGAAGCGACGGGTGCTGGTGGTGGATCTGGGATGGGGTTCAGTGGTGGGTTTCCGTCCAAGTTAACGGCGGATGTGACGGTGTGTAAAGATGGGAGTGGGTGTTATAAGACGATACAGGAAGCGGTGGAGGCGGCGCCAGGGAATGAGGTGGCGGAGGCGCGTAGGTTTGTGATACATATAAAGGAAGGGGTTTATGAGGAGATTGTAAGGGTTCCATTGGAGAAGAAGAATGTGGTGTTTTTGGGTGATGGGATGGGTAAAACGGTCATTACCGGCTCTTCGAATGTGGGTCAGCCTGGAATTTCTACTTATAATTCGGCTACCGTTGGAGTTCTTGGGGATGGATTCATGGCAAGTGATCTCACTATTCAGAACACTGCTGGTCCTGATGCCCACCAAGCTGTGGCCTTTAGATCAGACAGTGATCTATCTGTTATACAAAACTGTGAATTTCTTGGCAATCAAGACACTCTCTATGCTCACTCCCTCCGCCAATTCTACAAATCTTGTCGGATTCAAGGCAACGTCGATTTCATCTTTGGGAACTCTGCTTCTTTCTTCCAAGACTGCGAGATCTTGGTTCGTCCTCGGCAACTCAAACCTGAAAAGGGAGAGAACAATGCCATCACTGCTCAAGGCAGGACCGATCCTGCACAATCGACCGGTTTCGTCTTCCAGAATTGCTTGATAAATGGCACTGAGGAATACATGTCATTGTACTACAGCAAGCCTCAAGTGCACAAGAACTTCTTGGGGAGGCCATGGAAGGAGTATTCGAGGACAGTTTTCGTACACTGTAATCTCGAAGCGCTTGTTTCGCCACCGGGATGGATGCCATGGAGCGGTGAGTTTGCTTTGAAGACTCTCTTCTACGGGGAGTTTGAAAATTCGGGGACGGGTTCGAAGCTGTCACAGAGAGTAAGCTGGAGTAACGAGATTCCAGCAGAGCATGTTTTCAGTTACTCTGTGGAGAATTTCATTCAAGGGAATGAATGGATTCCATCATCAGAATCAGATAATCAACCTAAAAGGCTGGACAGGAAAAGCAAGTTTTTTATTAAATTAGATTAG 1800 49.06 MKKSSKPTSSFPLPFSKSTSFLFSMSSLFLFSLLSLFHFLSLSSSSSAHHHHHHHHHHNDNNPSTDLSSPTGPDPHHQACEATRFPDQCISSLTHHLPPKPTPLQIIQSAIGVSSENLETAISMVKDILDSSAHNPNRTTAAVNCLDHLRNSHYRISLTNDALPRGRIKDARSWMSASLLYHYDCWSSLKYANDTQLVNKTMSFLDSLIGFSSNALSMVVNYDIYGNDTGSWAPPKTERDGVWEATGAGGGSGMGFSGGFPSKLTADVTVCKDGSGCYKTIQEAVEAAPGNEVAEARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSSNVGQPGISTYNSATVGVLGDGFMASDLTIQNTAGPDAHQAVAFRSDSDLSVIQNCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSASFFQDCEILVRPRQLKPEKGENNAITAQGRTDPAQSTGFVFQNCLINGTEEYMSLYYSKPQVHKNFLGRPWKEYSRTVFVHCNLEALVSPPGWMPWSGEFALKTLFYGEFENSGTGSKLSQRVSWSNEIPAEHVFSYSVENFIQGNEWIPSSESDNQPKRLDRKSKFFIKLD 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7476523 7478763 + evm.model.ptg000016l.389 HCH10g0771 552844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0771 599 CDD PMEI-like_3 79 219 - -
HCH10g0771 599 Pfam Plant invertase/pectin methylesterase inhibitor 77 218 IPR006501 GO:0004857(InterPro)
HCH10g0771 599 FunFam Pectinesterase 261 586 - -
HCH10g0771 599 PANTHER PECTINESTERASE 41 578 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH10g0771 599 FunFam Probable pectinesterase/pectinesterase inhibitor 51 75 221 - -
HCH10g0771 599 Pfam Pectinesterase 267 573 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH10g0771 599 MobiDBLite consensus disorder prediction 48 80 - -
HCH10g0771 599 SMART PMEI_2 71 218 IPR006501 GO:0004857(InterPro)
HCH10g0771 599 Gene3D - 261 584 IPR012334 -
HCH10g0771 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 221 IPR035513 -
HCH10g0771 599 SUPERFAMILY Pectin lyase-like 265 578 IPR011050 -
HCH10g0771 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 219 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0771 HCH-Chr10:7476523 HCH7g1526 HCH-Chr7:47791557 9.20E-84 dispersed
HCH10g0771 HCH-Chr10:7476523 HCH11g1124 HCH-Chr11:42991513 7.30E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0771 - - - 0.0