Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0772 ATGGATTGTCTCTCAGATCTTGACCCAGATTTCTCTGAATTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACAATGAAATTCTGGGAAAAGGAGCTTCTAAAACAGTTTATAGAGCCTTTGATGAGTATGAAGGAATAGAGGTTGCTTGGAATCAAGTGAAACTCTATGATTTTCTACAAAGCCCAGAAGATCTTGAAAGGCTTTATTGTGAAATTCATCTTCTGAAGACTTTGAAGCACAAAAACATTATGAAATTCTACACTTCCTGGGTTGATATTGCAAATAGGAACATCAATTTTGTCACTGAAATGTTCACTTCTGGAACTCTTAGACAGTATAGGATAAAGCATAAGAGAGTTAACATTAGAGCAGTGAAGCATTGGTGCAGGCAGATTTTAAGGGGACTTCATTACTTGCATAGCCATGACCCTCCTGTAATTCATAGAGATCTTAAGTGTGACAATATCTTTGTCAATGGGAATCAAGGGGAAGTTAAGATTGGTGATCTTGGACTTGCTGCAATTCTCAGGAAATCTCATGCTGATCACTGTGTGGGTACCCCAGAGTTTATGGCTCCAGAAGTGTACGCAGAGGCGTATAATGAATTGGTCGATATTTACTCATTCGGAATGTGCATTTTGGAGATGATAACGTTTGAATATCCATACAGTGAATGCACGCATCCTGCACAGATCTACAAGAAAGTCGTATCTGGGAGAAAGCCAGAAGCCTTGTACAAAGTGAACGATCCAGAAGTGCGGGAATTCATCGAGAAGTGTTTGGCATCTGTTTCATTTAGGCTCTCAGCGGAGGAGCTCTTGAATGACCCTTTTCTTCAAATTGATAATGGTGAATATGATTTGAGGCCGGTCGATTATGGAAGAGGATTGGAGGATGTTGTTCCCCTCATGAGACAGCCCTACTTGGATCTTCATCGAAATGATAGCTCCTTTTGCAATGGATATACATATGATTATAGTTTTGAAGCCTCGAGTGAATCAGGATATCATCCAATTGACAATGAAACTCATGGAATTGAACTTTTTGAGTACTGTGAAGGTGAACATTCTGAAGATGTTGACATAAGCATTCAAGGGAAGATGAGAGAAGGAGGCGGCATCTTCTTAAGACTTAGAATTGCAGATAAAGAAGGACGTATCCGAAACATTTATTTCCCGTTTGACGTTGAGACGGATACAGCGTTAAGTGTCGCAACAGAAATGGTAGCAGAGCTGGATATCACAGATCAAGATGTGACCAGAATTGCAGATATGATTGATGGAGAAATTGCGTCATTGGTGCCTGATTGGAGCCCCGGTCCTGGAATTGAGGAAACGCCTCGCTTTGCAAACCAAAGCTTTTGTCATAACTGTGCTACATACAATGCTTCTAATGGTCTTTTAGCTGAGCATCTATCAAGGAATCCTGATGCAAAGATTTCTCAATGCTGTGGACATAAATATGCTTCAATGCACGGTCGTTTTGAGGAGATCATGTATCAGGCTGATGAGTCCGGGGATCATGTGACAGAGGATGCTCCAAATGTGTCGGGCCATTCTGATTGCCTGCATTATCCTGCAATATGGGGACAGCATGAAAGCCGCGAAATTAGTTCTATGAGCTCTAGACACAGTCATTCAGATGAAGACTACGAGAAAACAGATCGACCAGCTTCAGTCATGGATGGAAAAGAAATGATATCGGAAAGTAAAACTGCTTCTAAAACGAGAAGTTCGATTGAAGACCAAATGGGCTCCCTTTCCTTCTCTGCATCCCCTGCATTATATGAATCTTCAGGTAGGTATGAGAATGATATCCAGCAGGAAATGAGGTGGATTAAAGCCAAATACCAGATTGAGCTAAGCAATCTCAGAGATCAACAATTAAGAAGTCTTTCAAAATCTTTGAGTTGTGAAAACATAGAACAAAAAACAGAAAACGAAACATCATCATCATCTCTGGCATTACACACATTGCAAGATAACCACAATCAAGTGCCTGATACCTCTGCTCATGACATGAATCAAAGTACCAATAACATCTGTTGCAGTTCCGACACCCAAAGGCCTCGAAATTGCCGCACCATGGGATCCCCCATCATCGAGAAGGTAGCCCCCACCAAAAGTGCCTGCACTGGTTCATTGATCCCAAACTCTCTTCACAGAACAATCTCTCTTCCAGTTGATGCTGTTCATATATAA 2208 41.26 MDCLSDLDPDFSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRIKHKRVNIRAVKHWCRQILRGLHYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCILEMITFEYPYSECTHPAQIYKKVVSGRKPEALYKVNDPEVREFIEKCLASVSFRLSAEELLNDPFLQIDNGEYDLRPVDYGRGLEDVVPLMRQPYLDLHRNDSSFCNGYTYDYSFEASSESGYHPIDNETHGIELFEYCEGEHSEDVDISIQGKMREGGGIFLRLRIADKEGRIRNIYFPFDVETDTALSVATEMVAELDITDQDVTRIADMIDGEIASLVPDWSPGPGIEETPRFANQSFCHNCATYNASNGLLAEHLSRNPDAKISQCCGHKYASMHGRFEEIMYQADESGDHVTEDAPNVSGHSDCLHYPAIWGQHESREISSMSSRHSHSDEDYEKTDRPASVMDGKEMISESKTASKTRSSIEDQMGSLSFSASPALYESSGRYENDIQQEMRWIKAKYQIELSNLRDQQLRSLSKSLSCENIEQKTENETSSSSLALHTLQDNHNQVPDTSAHDMNQSTNNICCSSDTQRPRNCRTMGSPIIEKVAPTKSACTGSLIPNSLHRTISLPVDAVHI 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7501607 7504613 + evm.model.ptg000016l.388 HCH10g0772 552845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0772 735 SMART serkin_6 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0772 735 MobiDBLite consensus disorder prediction 539 562 - -
HCH10g0772 735 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
HCH10g0772 735 CDD STKc_WNK 22 281 - -
HCH10g0772 735 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0772 735 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
HCH10g0772 735 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
HCH10g0772 735 Gene3D - 374 439 - -
HCH10g0772 735 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
HCH10g0772 735 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 432 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
HCH10g0772 735 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 633 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH10g0772 735 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
HCH10g0772 735 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0772 735 MobiDBLite consensus disorder prediction 536 562 - -
HCH10g0772 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0772 735 FunFam probable serine/threonine-protein kinase WNK9 374 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0772 HCH-Chr10:7501607 HCH6g1589 HCH-Chr6:49078327 9.50E-224 dispersed
HCH2g0980 HCH-Chr2:53101309 HCH10g0772 HCH-Chr10:7501607 3.30E-132 transposed
HCH5g0644 HCH-Chr5:4601707 HCH10g0772 HCH-Chr10:7501607 5.80E-121 transposed
HCH7g1726 HCH-Chr7:49040484 HCH10g0772 HCH-Chr10:7501607 5.50E-138 transposed
HCH10g0772 HCH-Chr10:7501607 HCH8g0180 HCH-Chr8:6924322 3.50E-218 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80998 PF00069 Pkinase 1.20E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0772 K08867 - csv:101219552 1166.76