Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0786 ATGGGTTGTTTAGTTAGTAGAGAGGTGTCTTCTAGGAATTTAGCGGAATCCGAGGATAGGACGGAGAAGGGTTCAAGTGCTGAATTTGATGGTGATTTGGAAGTGAAGGAAGATGGTTTGGGGATTAATGTCATTAAGGATAATGATTCTGTGACTGAGAAAGGTGAGAAGGGTAATGAGGCTCAGGAGGTGGCAAGAGAGGAGAGAAGGAAGTCGAAACCGAACCCCAGATTGAGTAATTTTCCAAAGCAGTCTCAAGGGGAGCAGGTAGCGGCTGGTTGGCCGTCTTGGCTTACAGCTGTTTGTGGGGAGGCACTCAGTGGTTGGGTTCCGAGGAAGGCCGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATGCTTACAGGTAAAGTTGTTGCGCTGAAGAAGGTTCGGTTCGATAATTTAGAGCCAGAGAGTGTGAGATTTATGGCTAGAGAAATCCTCATTCTGCGACGACTAAATCATCCTAATGTTGTAAAGTTAGAGGGCTTGGTTACTTCAAGGATGTCGTGTAGTTTGTACCTAGTGTTTGAGTACTTCGAACATGATTTAGCTGGACTTGCAGCAAATCCAACGATCAAATTTTCAGAGCCCCAGGTCAAGTGTTTTGTACAACAACTGCTATCGGGACTTCAGCATTGTCATAGCCGGAGGGTGCTTCATCGTGACATTAAAGGTTCAAATCTTCTTATTGATGGTGGGGGATTGCTTAAGATTGCAGACTTCGGTTTAGCTACTTTCTTTGATCCAAAACATAAGCACCCCTTGACTAATCGTGTTGTTACCTTATGGTATCGATCTCCTGAGCTTCTACTTGGTGCAACTTATTATGGAGTAGGTGTTGACCTCTGGAGTGCAGGTTGCATTTTAGCAGAGTTACTAGCTGGGAGGCCCATAATGCCTGGCCGTACAGAGGTTGAGCAACTACATAAGATATTCAAGCTTTGTGGCTCACCCTCAGATGAATATTTAAAACGAGCAAAGTTGCCGAATGCAGCCTTATTTAAACCCCGAGAACCTTATAAGAGATGTATAAACGAGACTTTTAAAGATTTCCCCCTATCATCACTACCTCTTATAGAGACACTTCTTGCAATTGATCCTGCTGAAAGAATGACAGCTACAGATGCATTGAAGAGCGAGTTTTTCACCACAGAACCTTATGCTTGTGAACCTTCCGCCCTCCCCAAATATCCACCCAGTAAGGAGATGGATGCTAAACGCCGAGATGATGAGGCTCGAAGACAAAGAGCAGCAAGTAAATTGCAGAATGATCGTGTAAAGAAGACACGCACACGTAATCGTGCTGGTAGGGCTATTCCTATTCAAGGAGCCAATGCAGAACTCCAATCTAATATCGATAGGAGGCGTTTAATTACTCATGCAAATGCAAAGAGCAAGAGTGAAAAATTCCCTCCACCGCATCAGGATGGAGCACTTGGATTCACATTGGGATATTCGCGTCATATCGATCCTGCCGTCGTTCCTTCAGACATCCCATTCAGTTCCACATCATTTGGTTATCCAAATGAATCGGATCAAGCTTTGTCTGGTCCATTGCCCGAGTCTTCTGACATCAGTGCTCAGAGGCAGAAGCATGTGGGAGGTGATGCAAGAGAACAATCAAAGCGATCCTGGGTTAAAGGGAAAAAAGTGGCATGA 1716 44.23 MGCLVSREVSSRNLAESEDRTEKGSSAEFDGDLEVKEDGLGINVIKDNDSVTEKGEKGNEAQEVAREERRKSKPNPRLSNFPKQSQGEQVAAGWPSWLTAVCGEALSGWVPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKVVALKKVRFDNLEPESVRFMAREILILRRLNHPNVVKLEGLVTSRMSCSLYLVFEYFEHDLAGLAANPTIKFSEPQVKCFVQQLLSGLQHCHSRRVLHRDIKGSNLLIDGGGLLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATYYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNAALFKPREPYKRCINETFKDFPLSSLPLIETLLAIDPAERMTATDALKSEFFTTEPYACEPSALPKYPPSKEMDAKRRDDEARRQRAASKLQNDRVKKTRTRNRAGRAIPIQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDIPFSSTSFGYPNESDQALSGPLPESSDISAQRQKHVGGDAREQSKRSWVKGKKVA 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7981404 7986067 + evm.model.ptg000016l.374 HCH10g0786 552859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0786 571 MobiDBLite consensus disorder prediction 519 548 - -
HCH10g0786 571 CDD STKc_CDK9_like 117 401 - -
HCH10g0786 571 SMART serkin_6 117 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0786 571 FunFam probable serine/threonine-protein kinase At1g54610 200 441 - -
HCH10g0786 571 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
HCH10g0786 571 Pfam Protein kinase domain 117 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0786 571 MobiDBLite consensus disorder prediction 419 448 - -
HCH10g0786 571 MobiDBLite consensus disorder prediction 1 89 - -
HCH10g0786 571 MobiDBLite consensus disorder prediction 481 501 - -
HCH10g0786 571 MobiDBLite consensus disorder prediction 409 453 - -
HCH10g0786 571 FunFam probable serine/threonine-protein kinase At1g54610 104 199 - -
HCH10g0786 571 Gene3D Transferase(Phosphotransferase) domain 1 200 441 - -
HCH10g0786 571 PANTHER CELL DIVISION PROTEIN KINASE 116 401 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH10g0786 571 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524(InterPro)
HCH10g0786 571 MobiDBLite consensus disorder prediction 519 571 - -
HCH10g0786 571 MobiDBLite consensus disorder prediction 12 75 - -
HCH10g0786 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0786 571 SUPERFAMILY Protein kinase-like (PK-like) 111 406 IPR011009 -
HCH10g0786 571 ProSiteProfiles Protein kinase domain profile. 117 401 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0786 571 MobiDBLite consensus disorder prediction 550 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0786 HCH-Chr10:7981404 HCH7g1131 HCH-Chr7:44079946 8.20E-223 dispersed
HCH14g0179 HCH-Chr14:27401142 HCH10g0786 HCH-Chr10:7981404 6.60E-119 transposed
HCH3g0471 HCH-Chr3:3016538 HCH10g0786 HCH-Chr10:7981404 1.30E-185 transposed
HCH10g0786 HCH-Chr10:7981404 HCH2g1468 HCH-Chr2:56207564 2.90E-95 wgd
HCH10g0786 HCH-Chr10:7981404 HCH6g1609 HCH-Chr6:49234639 9.20E-25 wgd
HCH10g0786 HCH-Chr10:7981404 HCH8g0160 HCH-Chr8:6049572 1.10E-232 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80999 PF00069 Pkinase 4.00E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0786 K08819 - csv:101217497 969.533