Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0800 ATGTTGAGATATAATGTCGGCGGGAAAGTGGTTGAGAGAGTTGACTTATTAAGGAAGAAGTACTGGGCGTGGCGGTTGGATCTGTGGCCATTTGCTATTTTTTATGCAATTTGGCTTATTGTGATCGTTCCTAGCATAGATTTTGGAGACGCTTTCATTGTTTTAGGTGGATTTGTTTCTCTTCATGTTCTTGTCTTGCTCTTCACTGCCTGGTCTGTTGATTTCAAGTGTTTTATCCAGTTTGCTCAGGTTAAGGATATTCATGATGCTGATATATGCAAGATAGTTCCAGCTAAATTTTCTGGATCTAAAGAAATTGTTTCACTTCATTTTCGTAAGCCTCTTGCAGGTTCAGCATCCCCAGTGGATAATGAGGAGATCTACTTTGATTTCAGAAAACAACGGTTTATTTATTCAAAGGAGAAGGAGACTTTCTGCAAGCTTCCTTACCCAACTAAAGAGGCTTTTGGTTATTATCTAAAAAGTACTGGCCATGGCTCTGAGCCCAAGGTCGTAGCTGCAGTTGAAAAATGGGGACGCAATATATTCGAATACCCACAACCTACATTCCAGAAATTAATGAAAGAGCAGTGCATGGAGCCATTTTTTGTATTTCAGGTTTTTTGTGTGGGACTATGGTGTTTAGATGAGTATTGGTATTACAGCTTGTTTACTCTATTTATGCTGTTTATGTTTGAGTCAACAATGGCAAAAAGTCGGTTAAAGACCTTGAGTGAGCTAAGACGTGTGAAAGTGGATACTCAGACATTAATGGTGCATCGATGTGGAAAGTGGGTGAAATTATCTGGGTCTGAGCTTTTACCTGGAGATGTGGTCTCCATTGGGCGTGATTCTGGTCAGAATGGCGAAGATAGATCTGTACCTGCTGATATGCTTATATTGGCTGGAAGTGCTATTGTGAATGAAGCCATTCTTACAGGGGAATCTACACCACAATGGAAGGTTTCAATAAGTGGGAGAGGGATTGATGAGAAGTTATCTTCGAAAAGAGACAAAAGTCATATATTATTTGGTGGGACCAAGATATTGCAGCATACTCCGGATAAGACCTTTCCTCTGAAAACTCCTGATGGAGGCTGCTTAGCTGTTGTTCTGAGAACTGGATTTGAAACAAGTCAAGGAAAACTAATGCGTACAATTTTGTTTTCTACAGAGAGGGTTACAGCTAACAGCTGGGAAAGTGGCCTATTTATTTTATTCTTGGTCGTATTTGCCATTGTAGCTGCAGGTTACGTACTTAAAAAGGGGCTGGAAGATCCCACGAGAAGCAAGTACAAACTTTTTCTGAGTTGCTCGCTCATTATCACTTCTGTGATTCCTCCTGAGCTGCCCATGGAACTGTCAATAGCTGTTAATACGTCCTTAATTGCTCTGGCACGTCGTGGAATATTCTGTACGGAGCCTTTTCGAATACCATTTGCTGGAAAGGTTGATATTTGTTGTTTTGATAAAACTGGAACACTGACATCAGATGACATGGAATTTTGTGGAGTGGTTGGGTTAAATGATAACGAGGATTTGGAAACTGATATGACTAGAGTGCCTTTGCGCACAGTTGAAATTCTGGCTTCTTGTCATGCATTGGTGTTTGTGGACAACAAGTTGGTGGGGGATCCTCTTGAAAAGGCTGCACTCAAGGGAGTTGATTGGGCTTACAAATCCGATGAAAAAGCCATTCCCAGAAAGGGAAGTGGCAGTGCTGTTCAGATTGTTCAGAGACATCACTTTGCTTCACATTTGAAAAGAATGGCAGTCATTGTGCGTCTTCAAGAAGAATTTTTTGCATTTGTAAAGGGTGCCCCCGAAACTATTCAGGAGAGGCTCTCTAATGTGCCTTCATTTTACGTTGAGATGTATAAGAAATATACACGACAAGGGTCCCGAGTCCTGGCTCTTGCTTTCAAGTCACTTCCAGACATGACAGTTAGTGAAGCTAGAGGCTTGGAAAGGGACTTAGTGGAGAGTGACCTTACATTTGCTGGTTTTGCGGTATTTAATTGTCCAATCAGAGAAGATTCAGCTACAATATTGTCTGAGCTTAAAGGATCATCTCATGACTTGGTAATGATTACCGGTGACCAAGCTTTAACAGCATGCCATGTTTCCAGTCAAGTTCATATTACCTCAAAACAGATCTTAATTCTAAGTCCAAAGAGGAGTGCTCAGGAATATGAGTGGCTCTCCCCAGATGAATTACAATCAATTCCCTACAGTGAGAAAGAGGTGGGAAGTTTATCAGAGATATATGATCTGTGTATTGGAGGTGACTGCATTGAAATGCTACAACGCACCTCTACTGTTCTGGATGTTATTCCATACGTTAAGGTTTTCGCTAGAGTTGCTCCAGAGCAAAAAGAACTCATATTGACCACTTTCAAAATGGTGGGAAGAATGACGTTGATGTGTGGGGATGGAACAAACGATGTTGGAGCTTTGAAGCAGGCCCATGTTGGAATTGCTCTCTTAAATGCAGTTCCTCCCCCTCGCAGTGGAAAGTCTTCTTCAGATGGATCTAAAGATGAGTCAATGCGGTCTGCAAAGTCAAAGAAATCCAAACCTTCAACGGAAATAACAGGAAAATCACTCGTAAGTGGAGAAGGTTCTTCAAAAAGCAAACTTGGCGTGAAAATGGAATCTGCTGCCGAGCAAGTTAGTAACCGTCCTCGGACACCTGCAGAGATGCAAAGGCAAAAGCTAAAGAAGCTAATGGATGAGTTAAATGAAGACGGTGATGGGCGCTCTGCCCCTATCGTCAAGCTTGGGGATGCTTCCATGGCATCACCATTCACAGCAAAGCATGCATCTGTTGCCCCTACCACTGACATTATTCGCCAAGGTCGAAGTACCCTGGTGACAACTCTCCAGATGTTTAAAATACTTGGTCTCAACTGCCTCGCTACAGCCTATGTATTGAGTGTTATGTATTTGGACGGTGTGAAGCTTGGTGATGTTCAGGCAACTATCAGCGGAGTATTCACAGCAGCCTTTTTTCTCTTCATCTCCCATGCACGCCCCATGCCAACACTTTCAGCTGAACGGCCCCATCCTCATATTTTTTGCTCATATGTTCTGCTTTCTTTATTGGGGCAATTTGCAATCCACTTACTTTTCTTGATTTCTTCAGTGAAAGAAGCTGAGAAGCACATGCCTGATGAGTGTATAGAGCCCGACTCAAATTTTCATCCTAATTTGGTAAATACAGTTTCATACATGGTAAGCATGATGCTTCAGGTTGCCACCTTTGCTGTAAACTATATGGGTCATCCTTTCAACCAGAGTGTATCAGAAAACAAACCGTTCTTATACGCCCTTTTGGCTTCGGTTGGTTTCTTCACAGTTATCACCTCTGATTTATTTAGAGATCTGAATGACTGGCTGAAATTGGTGCCACTCCCCGTGGGGTTGAGGGACAAGCTATTGATTTGGGCTTTTCTTATGTTCGTATGCTGTTACTCTTGGGAAAGACTGTTGAGATGGGCTTTCCCTGGTAAAATCCCGGCATGGAGGAAGCGTCAACGACTCGCATCCGCTAATTTAGAAAAGAAGAAACATCTCTGA 3579 42.27 MLRYNVGGKVVERVDLLRKKYWAWRLDLWPFAIFYAIWLIVIVPSIDFGDAFIVLGGFVSLHVLVLLFTAWSVDFKCFIQFAQVKDIHDADICKIVPAKFSGSKEIVSLHFRKPLAGSASPVDNEEIYFDFRKQRFIYSKEKETFCKLPYPTKEAFGYYLKSTGHGSEPKVVAAVEKWGRNIFEYPQPTFQKLMKEQCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLSELRRVKVDTQTLMVHRCGKWVKLSGSELLPGDVVSIGRDSGQNGEDRSVPADMLILAGSAIVNEAILTGESTPQWKVSISGRGIDEKLSSKRDKSHILFGGTKILQHTPDKTFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFAIVAAGYVLKKGLEDPTRSKYKLFLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFCGVVGLNDNEDLETDMTRVPLRTVEILASCHALVFVDNKLVGDPLEKAALKGVDWAYKSDEKAIPRKGSGSAVQIVQRHHFASHLKRMAVIVRLQEEFFAFVKGAPETIQERLSNVPSFYVEMYKKYTRQGSRVLALAFKSLPDMTVSEARGLERDLVESDLTFAGFAVFNCPIREDSATILSELKGSSHDLVMITGDQALTACHVSSQVHITSKQILILSPKRSAQEYEWLSPDELQSIPYSEKEVGSLSEIYDLCIGGDCIEMLQRTSTVLDVIPYVKVFARVAPEQKELILTTFKMVGRMTLMCGDGTNDVGALKQAHVGIALLNAVPPPRSGKSSSDGSKDESMRSAKSKKSKPSTEITGKSLVSGEGSSKSKLGVKMESAAEQVSNRPRTPAEMQRQKLKKLMDELNEDGDGRSAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPMPTLSAERPHPHIFCSYVLLSLLGQFAIHLLFLISSVKEAEKHMPDECIEPDSNFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSVSENKPFLYALLASVGFFTVITSDLFRDLNDWLKLVPLPVGLRDKLLIWAFLMFVCCYSWERLLRWAFPGKIPAWRKRQRLASANLEKKKHL 1192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8302202 8331115 + evm.model.ptg000016l.360 HCH10g0800 552873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0800 1192 Gene3D - 669 834 IPR023214 -
HCH10g0800 1192 MobiDBLite consensus disorder prediction 841 861 - -
HCH10g0800 1192 SUPERFAMILY HAD-like 483 834 IPR036412 -
HCH10g0800 1192 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 1169 IPR023298 -
HCH10g0800 1192 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
HCH10g0800 1192 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
HCH10g0800 1192 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
HCH10g0800 1192 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
HCH10g0800 1192 CDD P-type_ATPase_cation 170 1107 IPR047820 -
HCH10g0800 1192 FunFam Cation-transporting ATPase 484 668 - -
HCH10g0800 1192 Pfam E1-E2 ATPase 256 468 - -
HCH10g0800 1192 SFLD p-type atpase 469 955 IPR044492 -
HCH10g0800 1192 NCBIfam HAD-IC family P-type ATPase 774 828 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g0800 1192 NCBIfam HAD-IC family P-type ATPase 403 511 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g0800 1192 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 679 IPR023299 GO:0000166(InterPro)
HCH10g0800 1192 SUPERFAMILY Calcium ATPase, transduction domain A 256 387 IPR008250 -
HCH10g0800 1192 Gene3D - 224 388 - -
HCH10g0800 1192 Pfam Cation transport ATPase (P-type) 540 617 - -
HCH10g0800 1192 FunFam Cation-transporting ATPase 669 844 - -
HCH10g0800 1192 FunFam Cation-transporting ATPase 226 388 - -
HCH10g0800 1192 PANTHER CATION-TRANSPORTING ATPASE-RELATED 9 1174 IPR006544 GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0019829(PANTHER)|GO:0030176(PANTHER)|GO:0055085(PANTHER)|GO:0140358(InterPro)
HCH10g0800 1192 NCBIfam ATP13A2 family polyamine export P-type ATPase 44 1149 IPR006544 GO:0016020(InterPro)|GO:0140358(InterPro)
HCH10g0800 1192 SFLD C1.7: P-type atpase like 469 955 - -
HCH10g0800 1192 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
HCH10g0800 1192 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
HCH10g0800 1192 Gene3D - 484 668 IPR023299 GO:0000166(InterPro)
HCH10g0800 1192 MobiDBLite consensus disorder prediction 830 903 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0800 K14950 - csv:101215828 2174.05