Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0828 | ATGGCACTGGAGGCTGTAGTTTTTCCTCAAGATCCACTAAGTTACAATGTCAACAAAGATCTATACACCTTATTTGGTGGAGGAAATTGGATTAGTAACTTCGGTCTAGAATTTGAATATAATCATCAACTCTCTAACAACTTTCTCGAGAACCAAACAGAAAGTTTCTCTTTCATAACTCCTTCCCCAAAACCCAACATTCCCACAATTCCAACTTCTCCATTAGAAGCTGAATCCAGCTCCTTACAAATCCGTCAGAGAAGAACACGAAGACCCAAAAGCCGAAAGAACAAAGAAGAAATCGAGAATCAAAGAATGACCCACATCGCCGTTGAACGAAATCGAAGGAAACAAATGAATGAATATCTCTCTGCTCTTCGTTCCTTAATGCCTGATTCTTTTGTCCAAAGGGGTGATCAGGCTTCAATAATTGGTGGAGCCATTAATTATGTGAAAGAGCTGGAGCAGAAAGTACAATTTCTGAGCACTGCTAAAAGAGATTCAAAGGGAAATAATAATATTAATTCAGAATCGTCGGTTATTCCATTCTCAGAATTCTTCAGTTTTCCACAGTTCACAGCGAGCGTTGAGGATTCTTCAGTGGGAATGGGAATGGGAGAGAGGCAGTGCTCAATTGCTGATATAGAAGTGACGATGGTTGAAAATCATGCAAATTTCAAAATAAGAGCAAAGAAGATGCCTAAGCAGCTGTTGAAAATGGTGGCTGGTTTACATTCTCTTTTCCTTACTGTTCTTCATCTCAATATCTCTACCACGGATCAATTTGTCCTCTATTCGATCAGTGCTAAGGTGGAGGATGATTGCAAGCTGACTTCAGTGGATGAAATTGCAACAGCTCTTCATCAGTTGGTGAGCAGAATAGAAGAAGATTCACTTCTGAACTGA | 906 | 39.74 | MALEAVVFPQDPLSYNVNKDLYTLFGGGNWISNFGLEFEYNHQLSNNFLENQTESFSFITPSPKPNIPTIPTSPLEAESSSLQIRQRRTRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSALRSLMPDSFVQRGDQASIIGGAINYVKELEQKVQFLSTAKRDSKGNNNINSESSVIPFSEFFSFPQFTASVEDSSVGMGMGERQCSIADIEVTMVENHANFKIRAKKMPKQLLKMVAGLHSLFLTVLHLNISTTDQFVLYSISAKVEDDCKLTSVDEIATALHQLVSRIEEDSLLN | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 9191465 | 9192904 | - | evm.model.ptg000016l.332 | HCH10g0828 | 552901 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0828 | 301 | PANTHER | MAX DIMERIZATION, MAD | 1 | 293 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH10g0828 | 301 | SMART | finulus | 109 | 160 | IPR011598 | GO:0046983(InterPro) | |
HCH10g0828 | 301 | Coils | Coil | 151 | 171 | - | - | |
HCH10g0828 | 301 | Pfam | Plant bHLH transcription factor, ACT-like domain | 215 | 287 | IPR054502 | - | |
HCH10g0828 | 301 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 103 | 154 | IPR011598 | GO:0046983(InterPro) | |
HCH10g0828 | 301 | Pfam | Helix-loop-helix DNA-binding domain | 104 | 155 | IPR011598 | GO:0046983(InterPro) | |
HCH10g0828 | 301 | MobiDBLite | consensus disorder prediction | 71 | 99 | - | - | |
HCH10g0828 | 301 | Gene3D | - | 101 | 180 | IPR036638 | GO:0046983(InterPro) | |
HCH10g0828 | 301 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 103 | 166 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0828 | HCH-Chr10:9191465 | HCH4g0243 | HCH-Chr4:1468335 | 4.80E-65 | dispersed | |
HCH7g1803 | HCH-Chr7:49575722 | HCH10g0828 | HCH-Chr10:9191465 | 5.80E-43 | transposed | |
HCH10g0828 | HCH-Chr10:9191465 | HCH8g0136 | HCH-Chr8:5460207 | 2.00E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32461 | PF00010 | HLH | 3.40E-11 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0828 | - | - | - | 0.0 |