Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0828 ATGGCACTGGAGGCTGTAGTTTTTCCTCAAGATCCACTAAGTTACAATGTCAACAAAGATCTATACACCTTATTTGGTGGAGGAAATTGGATTAGTAACTTCGGTCTAGAATTTGAATATAATCATCAACTCTCTAACAACTTTCTCGAGAACCAAACAGAAAGTTTCTCTTTCATAACTCCTTCCCCAAAACCCAACATTCCCACAATTCCAACTTCTCCATTAGAAGCTGAATCCAGCTCCTTACAAATCCGTCAGAGAAGAACACGAAGACCCAAAAGCCGAAAGAACAAAGAAGAAATCGAGAATCAAAGAATGACCCACATCGCCGTTGAACGAAATCGAAGGAAACAAATGAATGAATATCTCTCTGCTCTTCGTTCCTTAATGCCTGATTCTTTTGTCCAAAGGGGTGATCAGGCTTCAATAATTGGTGGAGCCATTAATTATGTGAAAGAGCTGGAGCAGAAAGTACAATTTCTGAGCACTGCTAAAAGAGATTCAAAGGGAAATAATAATATTAATTCAGAATCGTCGGTTATTCCATTCTCAGAATTCTTCAGTTTTCCACAGTTCACAGCGAGCGTTGAGGATTCTTCAGTGGGAATGGGAATGGGAGAGAGGCAGTGCTCAATTGCTGATATAGAAGTGACGATGGTTGAAAATCATGCAAATTTCAAAATAAGAGCAAAGAAGATGCCTAAGCAGCTGTTGAAAATGGTGGCTGGTTTACATTCTCTTTTCCTTACTGTTCTTCATCTCAATATCTCTACCACGGATCAATTTGTCCTCTATTCGATCAGTGCTAAGGTGGAGGATGATTGCAAGCTGACTTCAGTGGATGAAATTGCAACAGCTCTTCATCAGTTGGTGAGCAGAATAGAAGAAGATTCACTTCTGAACTGA 906 39.74 MALEAVVFPQDPLSYNVNKDLYTLFGGGNWISNFGLEFEYNHQLSNNFLENQTESFSFITPSPKPNIPTIPTSPLEAESSSLQIRQRRTRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSALRSLMPDSFVQRGDQASIIGGAINYVKELEQKVQFLSTAKRDSKGNNNINSESSVIPFSEFFSFPQFTASVEDSSVGMGMGERQCSIADIEVTMVENHANFKIRAKKMPKQLLKMVAGLHSLFLTVLHLNISTTDQFVLYSISAKVEDDCKLTSVDEIATALHQLVSRIEEDSLLN 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9191465 9192904 - evm.model.ptg000016l.332 HCH10g0828 552901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0828 301 PANTHER MAX DIMERIZATION, MAD 1 293 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH10g0828 301 SMART finulus 109 160 IPR011598 GO:0046983(InterPro)
HCH10g0828 301 Coils Coil 151 171 - -
HCH10g0828 301 Pfam Plant bHLH transcription factor, ACT-like domain 215 287 IPR054502 -
HCH10g0828 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 154 IPR011598 GO:0046983(InterPro)
HCH10g0828 301 Pfam Helix-loop-helix DNA-binding domain 104 155 IPR011598 GO:0046983(InterPro)
HCH10g0828 301 MobiDBLite consensus disorder prediction 71 99 - -
HCH10g0828 301 Gene3D - 101 180 IPR036638 GO:0046983(InterPro)
HCH10g0828 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 166 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0828 HCH-Chr10:9191465 HCH4g0243 HCH-Chr4:1468335 4.80E-65 dispersed
HCH7g1803 HCH-Chr7:49575722 HCH10g0828 HCH-Chr10:9191465 5.80E-43 transposed
HCH10g0828 HCH-Chr10:9191465 HCH8g0136 HCH-Chr8:5460207 2.00E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32461 PF00010 HLH 3.40E-11 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0828 - - - 0.0