Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0845 ATGCAAGATATATTCGCTTCAGTTCGTCGATCATTAGTTTTCCGTCCTCCAATTGATAATGACAACGACAATTCTCATACGCCCACGCCTGTAGTTGGAGTAGGAACCCTAGTTGATAAAATCATTAATTCAAGTATTCGTAAATCATCAAGAGTCTTTTCTAGGGTTCTTTCTCCTTCTCCCTCCCCCTCATCATCATCTCTTCCTCCGATTTCTAAGGATAACGAACCACCGATTCGATGGCGTAAGGGCGAATTGATCGGCTGTGGTGCTTTTGGTCGTGTTTATATGGGAATGAATCTTGATTCTGGAGAACTTCTTGCTGTTAAACAGGTTTCGATTGCAGCAAATAGTGCCTCCAAGGAGAAAGCTCAGGCTCATGTTGAGGAGCTCGAGGAAGAAGTGAAACTCCTCAGGGATCTTTCTCATCCAAATATTGTTAGATATTTGGGTACAGTTAGGGAGGACGATTCTTTAAATATATTGTTGGAATTTGTCCCTGGTGGATCCATTTCATCACTTTTGGGGAAATTTGGAGCTTTCCCTGAAGCAGTTATAAGAACGTATACGAAACAGTTATTATTGGGATTGGAATATTTACACCAGAATGGTATCATGCACAGGGATATTAAGGGGGCAAATATTCTTGTAGATAATAAGGGATGCATTAGGCTTGCAGATTTTGGTGCATCAAAACAGGTGGTCGAGCTGGCTACAATTTCTGGTGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTTTCTGCTGATATATGGAGTGTTGGATGCACTGTTATTGAGATGGCCACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTCTTCCATATAGGTACGACAAAGTCCCATCCACCAATCCCGGAGCAGCTTTCTGTTGAAGCTAAAGACTTTCTATTGAAATGCTTGCAGAAGGAACCAAACTTAAGATCAAGTGCATCTGAACTGCTGAAGCATCCTTTTGTTACCGGGAAGAAAATAGAATCTCAACTTGCATCTCATGATGCATGCATGGAGTCCTTGGAAATCCATTCACCTTTATATACTGCAAACCTGGAATTGAGTAGAACTTCGACACATCTTGGATCAAGTGATATGTGTAACTTGGATAGTCTGAGCTGCTCAAAAGTATATACTGAAAACAAAAAAGGTGATGATATATGGGTAACAAACAACAGTGATGATGAAATGTGTCTGATTGATGACGAGGATGATTTAATGTTAGACGAAGTAAAACTGAGGTCTTCTATTATGCCTGAAAATCTGAAGAGTTATAACCCAATTTGTGAGCCCTCTGATGATGAGGCTTGCAAATTGGATAAAAGTCCACCAGCAGACCAAGCAGGTAATTTGGATGAAGAAGCTCTTGCACCTGATGATTGCTCTGGAGTTTCTGATGTGGACAAAAACTTCTCATTTCCGTGTGGACAATCACTATCTGAAGATGACGATGAACTTACTGAATCTAAAATTAAAGCTTTCTTGGATGAAAAGGATTTGGAATTGAAGAAACTGCAGACACCACTATATGAAGAATTCTTCAATAGTTTGAATGCAGCCTGCTCTCCTGTTTTTATCGAAAGAAAACAAGATGAAGGTACTCCTAAATACTTGAAATTGCCCCCCAAAAGCAGGTCACCAAGTCGAAGTCCAGGTAATGCATCCGTAGCAGTTGATGCGTATGGTATTGGGAGTCCAGGGAGTAACAGAAGTAATGCAAATGATCAGAGTGAGCTTTATTCTGAAATACAGAGGAAGTGGAAAGAAGAACTTGATCAAGAACTTGAGAGAAAACGAGAGATGATGCGTCAGGCTGGCGTGGGAGGTAAAAGTTCATCACCAAAGGATAAAATCATTGCTAGGCAGAGAGAGCGGACAAGATTTGCATCTCCATTATGGTAA 1965 41.02 MQDIFASVRRSLVFRPPIDNDNDNSHTPTPVVGVGTLVDKIINSSIRKSSRVFSRVLSPSPSPSSSSLPPISKDNEPPIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASKEKAQAHVEELEEEVKLLRDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHQNGIMHRDIKGANILVDNKGCIRLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRSSASELLKHPFVTGKKIESQLASHDACMESLEIHSPLYTANLELSRTSTHLGSSDMCNLDSLSCSKVYTENKKGDDIWVTNNSDDEMCLIDDEDDLMLDEVKLRSSIMPENLKSYNPICEPSDDEACKLDKSPPADQAGNLDEEALAPDDCSGVSDVDKNFSFPCGQSLSEDDDELTESKIKAFLDEKDLELKKLQTPLYEEFFNSLNAACSPVFIERKQDEGTPKYLKLPPKSRSPSRSPGNASVAVDAYGIGSPGSNRSNANDQSELYSEIQRKWKEELDQELERKREMMRQAGVGGKSSSPKDKIIARQRERTRFASPLW 654
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 9437847 9442888 + evm.model.ptg000016l.315 HCH10g0845 552918
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0845 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0845 654 Pfam Protein kinase domain 82 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0845 654 MobiDBLite consensus disorder prediction 615 654 - -
HCH10g0845 654 FunFam Mitogen-activated protein kinase kinase kinase 2 80 372 - -
HCH10g0845 654 CDD STKc_MAPKKK 80 343 - -
HCH10g0845 654 FunFam Serine/threonine-protein kinase STE11 78 171 - -
HCH10g0845 654 MobiDBLite consensus disorder prediction 460 482 - -
HCH10g0845 654 Coils Coil 114 141 - -
HCH10g0845 654 SUPERFAMILY Protein kinase-like (PK-like) 80 382 IPR011009 -
HCH10g0845 654 Gene3D Transferase(Phosphotransferase) domain 1 80 370 - -
HCH10g0845 654 MobiDBLite consensus disorder prediction 53 77 - -
HCH10g0845 654 MobiDBLite consensus disorder prediction 53 72 - -
HCH10g0845 654 SMART serkin_6 81 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0845 654 MobiDBLite consensus disorder prediction 553 599 - -
HCH10g0845 654 ProSiteProfiles Protein kinase domain profile. 81 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0845 654 Coils Coil 605 625 - -
HCH10g0845 654 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524(InterPro)
HCH10g0845 654 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 62 347 IPR050538 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0845 HCH-Chr10:9437847 HCH14g0125 HCH-Chr14:22616578 1.10E-74 dispersed
HCH13g0101 HCH-Chr13:654791 HCH10g0845 HCH-Chr10:9437847 1.40E-18 dispersed
HCH9g1010 HCH-Chr9:8086536 HCH10g0845 HCH-Chr10:9437847 5.30E-15 dispersed
HCH10g0845 HCH-Chr10:9437847 HCH6g1609 HCH-Chr6:49234639 3.60E-198 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81001 PF00069 Pkinase 4.30E-72 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0845 K20606 - csv:101209358 963.755