Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0895 ATGGGGCATTTCTCCACCATGTTCAATGGGTTGGCAAGGTCGTTTTCCTTTAAGAAAGTTAGGAATTCGGTGAATTTAGGCGAAGCCGGAGAAAGAGAAGCTGCAGAAGCTATGGCTAAGGATGCGAAGAAGAACGAGTTGATTTTACGCTCTTCTGGCGTTATAAATGCGGAAGGTTCGGATAATTTTACTTCAGTTTTCTCGAAAAGAGGCGAGAAAGGGATCAATCAAGACTGTTGCATTGTATGGGAGGAATTTGGATGTCAAGAAGACATGATATTCTGTGGGATTTTTGATGGGCATGGACCATGGGGTCATTTTGTTGCAAAAAGGGTAAGAGAATCAATGCCACCATCTTTGCTGTGCAATTGGCAGCAGGCACTTGCTCAAAGTTTTCTGGACTCGGAATCGGATTCAGAAAAGAATCGTCAGCGGTTTGATATATGGCAGCATTCTTATATAAGGACTTGTGCTGCCATCGATCATGAACTTGAGCAGCATCGCAAAATCGATACATTTTACAGTGGAACGACTGCCCTTTCTATTGTTAGACAGGGTGAATTAATCGTGTTAGCTAATGTCGGTGACTCTCGTGCCGTGTTGGCTACCACTTCAGATGATGGAAGTGTAGTACCAGTGCAGCTCACTGTTGATTCCAAACCCAACCTACCTCAGGAGGCCGAGCGGATACTCCAGTGCAATGGGAGGGTGTTTTGCTTAGGTGACGAACCGGGAGTTCACAGGGTCTGGCTTCCTGATGACGATTCGCCTGGGTTGGCAATGTCTAGAGCCTTTGGTGATTATTGTGTAAAAAAATTTGGGCTTATTTCTGTGCCTGAAGTGACACATAGAATCATAACCAGTAAAGACCAATTTATTGTGTTGGCAACTGATGGGGTATGGGATGTTGTCTCCAACCAAGAAGCAGTGGAGATTGTATCATCAACACCAGATAGAGCGAAATCAGCAAAACGCTTGGTCGAGTGTGCCGTTCGGGCATGGAAACGCAAGAGACGGGGCATTGCAGTGGATGACGTATCAGCCATATGCCTCTTCTTCCACTCTTCCCCTTCATCAGAGCAAGATCACCTTGTATCCACACCTAAATAG 1110 45.5 MGHFSTMFNGLARSFSFKKVRNSVNLGEAGEREAAEAMAKDAKKNELILRSSGVINAEGSDNFTSVFSKRGEKGINQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRVRESMPPSLLCNWQQALAQSFLDSESDSEKNRQRFDIWQHSYIRTCAAIDHELEQHRKIDTFYSGTTALSIVRQGELIVLANVGDSRAVLATTSDDGSVVPVQLTVDSKPNLPQEAERILQCNGRVFCLGDEPGVHRVWLPDDDSPGLAMSRAFGDYCVKKFGLISVPEVTHRIITSKDQFIVLATDGVWDVVSNQEAVEIVSSTPDRAKSAKRLVECAVRAWKRKRRGIAVDDVSAICLFFHSSPSSEQDHLVSTPK 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11363640 11365698 + evm.model.ptg000016l.265 HCH10g0895 552968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0895 369 Pfam Protein phosphatase 2C 84 330 IPR001932 -
HCH10g0895 369 Gene3D - 50 355 IPR036457 -
HCH10g0895 369 CDD PP2Cc 65 353 IPR001932 -
HCH10g0895 369 PANTHER PROTEIN PHOSPHATASE 46 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH10g0895 369 SMART PP2C_4 51 351 IPR001932 -
HCH10g0895 369 FunFam Probable protein phosphatase 2C 34 54 355 - -
HCH10g0895 369 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
HCH10g0895 369 SUPERFAMILY PP2C-like 63 355 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0895 HCH-Chr10:11363640 HCH7g0165 HCH-Chr7:1106621 2.90E-88 dispersed
HCH10g0895 HCH-Chr10:11363640 HCH6g1717 HCH-Chr6:49832513 1.50E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0895 - - - 0.0