Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0899 | ATGGCGTCGAGGAATCGAACTTTGCTTTTTAGGAAATACAGAGATGCGTTGAAAAGCGTTAGGGTTCCTACCAGCTCTTCGCCATCGACTAGTTCCGGTATCGGTGGTGCTGGTGGTCCCGTTATTGAATTGGTTAGCTCATCGTTGTTGAATCCGAATCGCTCTTACGCTCCTTTGAGTACAGAGGATCCTGGTAATTCAAGTAAGGGTGCGCTTACTGTGGGTCTACCTCCGGCTTGGGTGGATGTATCAGAAGAAATAGCAGCTAATGTGCAGCGTGCACGAGTGAAGATGGCGGAGTTGGCTAAAGCTCATGCCAAAGCTTTAATGCCTTCATTTGGAGATGGAAAAGAAGATCAGCGGTTAATTGAGGCTCTTACGCAAGAGATAACAAATTTAATAAAGAAATCAGAGAAAAAACTCCAAAGACTTTCTGCAGCTGGACCCTCTGAAGACTCCAATATCAGAAAAAATGTGCAGCGATCTCTTGCCACTGACCTTCAGAACCTTTCTATGGAGCTTCGCAAGAAACAATCAACTTACTTAAAGCGCCTAAGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACTTGGAGATGAATCTAAACGGAAATAGATCGAGATCAGAGGATGATGATTTGGACAACATGGTATTTAATGAGCATCAGATGGCGAAGCTGCGAAAGAGTGAAGCATTCACGGCTGAAAGAGAAAGAGAGATCCAACAAGTCGTAGAATCCGTGAATGAGCTTGCACAGGTCATGAAGGATCTGTCGGTACTTGTCATAGACCAGGGCACCATCGTTGATAGGATAGATTACAACATTCAAAACGTTGCTACTACGGTCGAGGAGGGCCTTAAGCAACTGCAGAAGGCAGAGAAAACACAGAAACAAGGGGGGATGGTAATGTGTGTATCCGTGCTCATTATCATGTGCTTTGTCATGTTGGTCCTCCTCGTCCTAAAGACGATACTCTTTTGA | 984 | 44.82 | MASRNRTLLFRKYRDALKSVRVPTSSSPSTSSGIGGAGGPVIELVSSSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMAELAKAHAKALMPSFGDGKEDQRLIEALTQEITNLIKKSEKKLQRLSAAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDLEMNLNGNRSRSEDDDLDNMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQVMKDLSVLVIDQGTIVDRIDYNIQNVATTVEEGLKQLQKAEKTQKQGGMVMCVSVLIIMCFVMLVLLVLKTILF | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 11467217 | 11469796 | + | evm.model.ptg000016l.261 | HCH10g0899 | 552972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0899 | 327 | Coils | Coil | 182 | 202 | - | - | |
HCH10g0899 | 327 | ProSitePatterns | Syntaxin / epimorphin family signature. | 237 | 276 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
HCH10g0899 | 327 | SMART | SynN_4 | 71 | 186 | IPR006011 | GO:0016020(InterPro) | |
HCH10g0899 | 327 | Gene3D | - | 77 | 285 | - | - | |
HCH10g0899 | 327 | SMART | tSNARE_6 | 226 | 293 | IPR000727 | - | |
HCH10g0899 | 327 | SUPERFAMILY | t-snare proteins | 76 | 286 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
HCH10g0899 | 327 | Coils | Coil | 123 | 147 | - | - | |
HCH10g0899 | 327 | CDD | SNARE_syntaxin16 | 235 | 292 | - | - | |
HCH10g0899 | 327 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 231 | 293 | IPR000727 | - | |
HCH10g0899 | 327 | FunFam | Syntaxin-43 | 77 | 285 | - | - | |
HCH10g0899 | 327 | PANTHER | SYNTAXIN | 89 | 311 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
HCH10g0899 | 327 | Pfam | SNARE domain | 267 | 319 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0899 | HCH-Chr10:11467217 | HCH4g1049 | HCH-Chr4:6757196 | 7.20E-107 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0899 | K08489 | - | csv:101207998 | 541.576 |