Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0899 ATGGCGTCGAGGAATCGAACTTTGCTTTTTAGGAAATACAGAGATGCGTTGAAAAGCGTTAGGGTTCCTACCAGCTCTTCGCCATCGACTAGTTCCGGTATCGGTGGTGCTGGTGGTCCCGTTATTGAATTGGTTAGCTCATCGTTGTTGAATCCGAATCGCTCTTACGCTCCTTTGAGTACAGAGGATCCTGGTAATTCAAGTAAGGGTGCGCTTACTGTGGGTCTACCTCCGGCTTGGGTGGATGTATCAGAAGAAATAGCAGCTAATGTGCAGCGTGCACGAGTGAAGATGGCGGAGTTGGCTAAAGCTCATGCCAAAGCTTTAATGCCTTCATTTGGAGATGGAAAAGAAGATCAGCGGTTAATTGAGGCTCTTACGCAAGAGATAACAAATTTAATAAAGAAATCAGAGAAAAAACTCCAAAGACTTTCTGCAGCTGGACCCTCTGAAGACTCCAATATCAGAAAAAATGTGCAGCGATCTCTTGCCACTGACCTTCAGAACCTTTCTATGGAGCTTCGCAAGAAACAATCAACTTACTTAAAGCGCCTAAGGCAGCAAAAAGAGGAAGTTCAAGATGGGATTGACTTGGAGATGAATCTAAACGGAAATAGATCGAGATCAGAGGATGATGATTTGGACAACATGGTATTTAATGAGCATCAGATGGCGAAGCTGCGAAAGAGTGAAGCATTCACGGCTGAAAGAGAAAGAGAGATCCAACAAGTCGTAGAATCCGTGAATGAGCTTGCACAGGTCATGAAGGATCTGTCGGTACTTGTCATAGACCAGGGCACCATCGTTGATAGGATAGATTACAACATTCAAAACGTTGCTACTACGGTCGAGGAGGGCCTTAAGCAACTGCAGAAGGCAGAGAAAACACAGAAACAAGGGGGGATGGTAATGTGTGTATCCGTGCTCATTATCATGTGCTTTGTCATGTTGGTCCTCCTCGTCCTAAAGACGATACTCTTTTGA 984 44.82 MASRNRTLLFRKYRDALKSVRVPTSSSPSTSSGIGGAGGPVIELVSSSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMAELAKAHAKALMPSFGDGKEDQRLIEALTQEITNLIKKSEKKLQRLSAAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEVQDGIDLEMNLNGNRSRSEDDDLDNMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQVMKDLSVLVIDQGTIVDRIDYNIQNVATTVEEGLKQLQKAEKTQKQGGMVMCVSVLIIMCFVMLVLLVLKTILF 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11467217 11469796 + evm.model.ptg000016l.261 HCH10g0899 552972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0899 327 Coils Coil 182 202 - -
HCH10g0899 327 ProSitePatterns Syntaxin / epimorphin family signature. 237 276 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH10g0899 327 SMART SynN_4 71 186 IPR006011 GO:0016020(InterPro)
HCH10g0899 327 Gene3D - 77 285 - -
HCH10g0899 327 SMART tSNARE_6 226 293 IPR000727 -
HCH10g0899 327 SUPERFAMILY t-snare proteins 76 286 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH10g0899 327 Coils Coil 123 147 - -
HCH10g0899 327 CDD SNARE_syntaxin16 235 292 - -
HCH10g0899 327 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 231 293 IPR000727 -
HCH10g0899 327 FunFam Syntaxin-43 77 285 - -
HCH10g0899 327 PANTHER SYNTAXIN 89 311 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH10g0899 327 Pfam SNARE domain 267 319 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0899 HCH-Chr10:11467217 HCH4g1049 HCH-Chr4:6757196 7.20E-107 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0899 K08489 - csv:101207998 541.576