Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0907 | ATGGCTCATTCCAGCAATCCCGCAGCTGGGGTTGATAACACTTTTAGAAGGAAATTTGATAGAGAGGAGTATTTGGAACGAGCTCGTGAACGTGAAAAACAGGAGCTTGATAGGGTTAAATCCAAATTGAAAGGTCCGCCCGTGCAAAGGAAACCGTTAAAACATAGAGATTACGAGGTAGACCTCGAATCCCGGTTAGGGAAAACTCAGGTTGTTACTCCAGTTGCACCTCTTAGTCAGCAGGCTGGATACTTCTGTTCTGTTTGCGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGACCACATCAATGGAAAGAAGCATCAGAGAGCATTGGGTATGTCCATGCGCGTAGAACGGGCATCTCTTGAGCAGGTTCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAAGCACCCCAGGAAGCTTCACAGAACAAGATCTTGAGGAGCGTATACTAAAGCAGCAACAAGAAGAGGAAGAACGGAAGCGCCAACGTCGAGAAAGGAAGAAAGAGAAGAAGAAAGAGAAGGCTGTAGAAGAGGAACCTGAAATGGATGCTGACGTTGCAGCAATGATGGGATTTGGGGGTTTCCGTTCATCCAAAAAGTGA | 612 | 45.59 | MAHSSNPAAGVDNTFRRKFDREEYLERAREREKQELDRVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYFCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKSTPGSFTEQDLEERILKQQQEEEERKRQRRERKKEKKKEKAVEEEPEMDADVAAMMGFGGFRSSKK | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 11595417 | 11598121 | + | evm.model.ptg000016l.253 | HCH10g0907 | 552980 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0907 | 203 | Coils | Coil | 116 | 136 | - | - | |
| HCH10g0907 | 203 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 8 | 203 | IPR040107 | GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0005681(InterPro)|GO:0046540(PANTHER) | |
| HCH10g0907 | 203 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 125 | IPR036236 | - | |
| HCH10g0907 | 203 | Gene3D | Classic Zinc Finger | 78 | 116 | - | - | |
| HCH10g0907 | 203 | SMART | ZnF_U1_5 | 81 | 115 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| HCH10g0907 | 203 | FunFam | zinc finger matrin-type protein 2-like | 78 | 116 | - | - | |
| HCH10g0907 | 203 | Coils | Coil | 145 | 182 | - | - | |
| HCH10g0907 | 203 | MobiDBLite | consensus disorder prediction | 136 | 203 | - | - | |
| HCH10g0907 | 203 | Pfam | Zinc-finger of C2H2 type | 84 | 108 | IPR013087 | - | |
| HCH10g0907 | 203 | Coils | Coil | 22 | 42 | - | - | |
| HCH10g0907 | 203 | MobiDBLite | consensus disorder prediction | 30 | 51 | - | - | |
| HCH10g0907 | 203 | MobiDBLite | consensus disorder prediction | 136 | 166 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0907 | K12848 | - | csv:101206387 | 325.094 |