Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0911 ATGAGACTGTTCTTTTCAACTGTCTTCTTCTTCGTCATCTTTTCTCAAGCAGCTGCATATGATCCTTTGGATCCAAATGGGAACATTACAATCAAATGGGATGTCATGTCATGGACACCAGATGGCTATGTGGCAGTGGTAACTTTGAATAACTTCCAAATGTATAGGCATATAATGAGCCCTGGGTGGAGCATCGGATGGACATGGGCTAAGAAAGAAGTGATATGGTCTATGGTTGGGTCTCAGACCACAGAGCAAGGTGACTGCTCCAAATTCAAAGGAAATATACCTCATTGTTGCAAGAAAAATCCCACTGTTGTGGATTTGCTCCCTGGAGTTCCTTACAATCAACAGTTCACTAATTGCTGCAAAGGTGGAGTTGTGGCTGCTTGGGGACAAGACCCTCAAGCTTCTGTATCAGCCTTCCAGGTCAGTATTGGGCAAGCAGGCACTTCAAACAAGACTGTGAAACTTCCCAAAAACTTCACTTTGCTTGGTCCTGGACCAGGATATACTTGTGGCCCTGCAAAGATAGTGCCTTCCACCACCTTTCTCACACCCGATCGCCGACGAAAAACACAGGCCCTGATGACTTGGAATGTGACATGTACTTACTCGCAGTTTCTGGCTAGAAAAAACCCAAATTGCTGTGTTTCTTTCTCATCTTTCTACAATGATACAATCACATCTTGTCCATCTTGTGCATGTGGTTGCCATAACAAGAACACATGCATCAAGAGTGACTCTAAGATTCTTAAAATGGTAGGAGTAAATACTCCAAGGAAAGATAACGCCCCATTGCTGCAATGCACACACCATATGTGCCCGGTTCGAGTTCACTGGCATGTGAAGTCCAATTACAAGGACTATTGGAGAGTGAAGATTGCCATTACAAATTTCAACTACCGAATGAACTACTCGCTTTGGTCTTTGGTCGTTCAACATCCGAATCTAAACAATGTTACCCAAGTTTTCAGCTTTGATTACAAGCCACTCGTTCCCTACGAATCCATCAATGACACAGGGATGTTTTATGGGATGAAGTTTTACAATGACCTTTTGATGGAAGCTGGGCCATTTGGGAATGTTCAATCAGAGGTGTTGCTTCACAAGGATCAGAACACTTTTACCTTCAAGCAGGGATGGGCGTTTCCTCGAAAAGTTTACTTCAACGGCGACGAATGCACGCTTCCGCCACCCGATACATACCCGTTTCTCCCCAACTCCGCCCATCAAAACTCCATCGCTCTTTCAACTCTAGCCGCTTTCTTGCTTTTCCTGTTGCTAGCTATCTGCTGA 1299 44.42 MRLFFSTVFFFVIFSQAAAYDPLDPNGNITIKWDVMSWTPDGYVAVVTLNNFQMYRHIMSPGWSIGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKNPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPQASVSAFQVSIGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKIVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCACGCHNKNTCIKSDSKILKMVGVNTPRKDNAPLLQCTHHMCPVRVHWHVKSNYKDYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLHKDQNTFTFKQGWAFPRKVYFNGDECTLPPPDTYPFLPNSAHQNSIALSTLAAFLLFLLLAIC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11712351 11714324 + evm.model.ptg000016l.249 HCH10g0911 552984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0911 432 PIRSF COBRA 1 432 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH10g0911 432 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH10g0911 432 PANTHER PROTEIN COBRA 6 427 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0911 HCH-Chr10:11712351 HCH8g1231 HCH-Chr8:47672489 1.00E-188 dispersed
HCH10g0911 HCH-Chr10:11712351 HCH8g1230 HCH-Chr8:47669485 2.50E-224 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0911 - - - 0.0