Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0926 ATGTGCTGTGAGGAAGTGCTTTTGGTCCAAAAGGTTTCTGAATTATACAAGAAAATCTCAAGCCTTGAAAGTCTCAAACCCAGCAAAGATGTCAACTTTCTCTTCACCCAGCTTGTTCTCATCACTTGCAATATCAATATTCCACCACCATCGCCTCCCATTGATGTCACCAAAATGTGCAAAGAAGTTCAGGAAATGAGGTCCAAGCTCATCAAGCTCTGTGGAGAAGCTGAGGGGCTTTTGGAGCATCATTTCTCCTCCATTTTATCTTCTTACAAAAACCCTCTTCAGAATCTCGCCATTTTCCCTTATTATTCCAATTACCTCAAACTCACTCACCTTGAATTCAACATATTGAATCAACACTGTTTTAAAAAACCCAACAAGATTGCCTTCTTGGGCTCTGGCCCTCTCCCTTTCTCTTCAATCATCATGGCCTTACAACACCTCCCCACCACTCAGTTTCACAACTTCGATATCGACCCGTCGGCCAACTCGAAGGCGGCTGCCTTGGTAGCCACCGATCCGGACCTTTCGAAGAGAATGTTCTTCCACACGGCCGATGTCATGGACGTGGCGAGGGAGCTGAAGGAGTTTGAGGTGGTGTTTCTGGCAGCACTGGTGGGGATGGAAAGGGAAGAGAAAGTGAAAGTGATCGATCATTTGGCTAACTACATGGCTGCTGGTGCTTTTCTGATGCTGAGGAGCGCGCATGGGGCTCGGGCTTTTCTTTATCCCGTGGTTGAGCCTTGTGACCTCCGAGGGTTTGAGATTCTTACAGTGTTTCATCCCACTGATGAAGTTATCAATTCTGTTGTCTTGGCTCGTTTATAA 834 46.28 MCCEEVLLVQKVSELYKKISSLESLKPSKDVNFLFTQLVLITCNINIPPPSPPIDVTKMCKEVQEMRSKLIKLCGEAEGLLEHHFSSILSSYKNPLQNLAIFPYYSNYLKLTHLEFNILNQHCFKKPNKIAFLGSGPLPFSSIIMALQHLPTTQFHNFDIDPSANSKAAALVATDPDLSKRMFFHTADVMDVARELKEFEVVFLAALVGMEREEKVKVIDHLANYMAAGAFLMLRSAHGARAFLYPVVEPCDLRGFEILTVFHPTDEVINSVVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12181963 12182796 + evm.model.ptg000016l.234 HCH10g0926 552999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0926 277 Gene3D Vaccinia Virus protein VP39 4 277 IPR029063 -
HCH10g0926 277 PANTHER NICOTIANAMINE SYNTHASE 3 5 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0926 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0926 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0926 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 84 236 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0926 HCH-Chr10:12181963 HCH10g0927 HCH-Chr10:12293431 1.40E-98 tandem
HCH8g1022 HCH-Chr8:46226998 HCH10g0926 HCH-Chr10:12181963 9.90E-76 transposed
HCH10g0926 HCH-Chr10:12181963 HCH8g0054 HCH-Chr8:2965696 7.00E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0926 K05953 - cit:102621359 403.29