Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0926 ATGTGCTGTGAGGAAGTGCTTTTGGTCCAAAAGGTTTCTGAATTATACAAGAAAATCTCAAGCCTTGAAAGTCTCAAACCCAGCAAAGATGTCAACTTTCTCTTCACCCAGCTTGTTCTCATCACTTGCAATATCAATATTCCACCACCATCGCCTCCCATTGATGTCACCAAAATGTGCAAAGAAGTTCAGGAAATGAGGTCCAAGCTCATCAAGCTCTGTGGAGAAGCTGAGGGGCTTTTGGAGCATCATTTCTCCTCCATTTTATCTTCTTACAAAAACCCTCTTCAGAATCTCGCCATTTTCCCTTATTATTCCAATTACCTCAAACTCACTCACCTTGAATTCAACATATTGAATCAACACTGTTTTAAAAAACCCAACAAGATTGCCTTCTTGGGCTCTGGCCCTCTCCCTTTCTCTTCAATCATCATGGCCTTACAACACCTCCCCACCACTCAGTTTCACAACTTCGATATCGACCCGTCGGCCAACTCGAAGGCGGCTGCCTTGGTAGCCACCGATCCGGACCTTTCGAAGAGAATGTTCTTCCACACGGCCGATGTCATGGACGTGGCGAGGGAGCTGAAGGAGTTTGAGGTGGTGTTTCTGGCAGCACTGGTGGGGATGGAAAGGGAAGAGAAAGTGAAAGTGATCGATCATTTGGCTAACTACATGGCTGCTGGTGCTTTTCTGATGCTGAGGAGCGCGCATGGGGCTCGGGCTTTTCTTTATCCCGTGGTTGAGCCTTGTGACCTCCGAGGGTTTGAGATTCTTACAGTGTTTCATCCCACTGATGAAGTTATCAATTCTGTTGTCTTGGCTCGTTTATAA 834 46.28 MCCEEVLLVQKVSELYKKISSLESLKPSKDVNFLFTQLVLITCNINIPPPSPPIDVTKMCKEVQEMRSKLIKLCGEAEGLLEHHFSSILSSYKNPLQNLAIFPYYSNYLKLTHLEFNILNQHCFKKPNKIAFLGSGPLPFSSIIMALQHLPTTQFHNFDIDPSANSKAAALVATDPDLSKRMFFHTADVMDVARELKEFEVVFLAALVGMEREEKVKVIDHLANYMAAGAFLMLRSAHGARAFLYPVVEPCDLRGFEILTVFHPTDEVINSVVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12181963 12182796 + evm.model.ptg000016l.234 HCH10g0926 552999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0926 277 Gene3D Vaccinia Virus protein VP39 4 277 IPR029063 -
HCH10g0926 277 PANTHER NICOTIANAMINE SYNTHASE 3 5 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0926 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0926 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0926 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 84 236 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0926 K05953 - - cit:102621359 403.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0926 HCH-Chr10:12181963 HCH10g0927 HCH-Chr10:12293431 1.40E-98 tandem
HCH8g1022 HCH-Chr8:46226998 HCH10g0926 HCH-Chr10:12181963 9.90E-76 transposed
HCH10g0926 HCH-Chr10:12181963 HCH8g0054 HCH-Chr8:2965696 7.00E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 65.5 4.2e-99 358.2
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT1G09240 57.1 2.1e-95 345.9
HCH10g0927 . 5 334 Nicotianamine Synthase Gene Family AT1G09240 55.4 4.5e-93 338.2
HCH8g1022 . 19 284 Nicotianamine Synthase Gene Family AT1G09240 54.8 3.2e-75 278.9
HCH10g0926 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 63.8 1.6e-98 356.3
HCH8g0054 . 3 320 Nicotianamine Synthase Gene Family AT1G56430 55.9 1.4e-97 353.2
HCH10g0927 . 5 334 Nicotianamine Synthase Gene Family AT1G56430 55.8 6.3e-95 344.4
HCH8g1022 . 21 284 Nicotianamine Synthase Gene Family AT1G56430 54.5 7.7e-77 284.3
HCH10g0927 . 1 281 Nicotianamine Synthase Gene Family AT5G04950 60.9 7.6e-93 337.4
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 60.2 3.8e-92 335.1
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT5G04950 53.7 1.4e-91 333.2
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT5G56080 53.8 1.3e-92 336.7
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 60.1 5.5e-91 331.3
HCH10g0927 . 1 281 Nicotianamine Synthase Gene Family AT5G56080 59.6 3.5e-90 328.6
HCH8g1022 . 20 284 Nicotianamine Synthase Gene Family AT5G56080 50.7 2.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125