Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0927 ATGGTTTGCAAGCAAGAAGAGCTTCTGTTGAAAACAGTAAGCGAATTATACGAGCAGATTTCAAGCCTCGACAGCCTGAAACCTTGTAAAAATGTCGACATGCTTTTCACAAACCTAGTTTTGACATGCATGTCTCACACCCCCTCACCCCTCGACATCACTAAGCTTTGTCAAACCAAAACCCATCAAGAAATGAGGTCAAATCTCATCAAGCTCTGTGGTGAAGCTGAGGGGCTTTTAGAGATTCATTTTTCAACTATTTTGTCCTCTTTTAATAACCCACTTGAGAATCTCAATCTTTTCCCTTACTATTCCAATTACCTTAAACTCTCTCTCTTGGAATTCAATATTCTCAAAACTCATTGGCACTCCCCTCTTCTTTTGCCTTCTAAAATTGCCTTTCTCGGCTCTGGTCCACTCCCTCTCACCTCTATTGTTTTGGCTTCAAATCATCTTAAATCCACCACTTTTCATAACTTTGATATTGACCCGTTAGCCAATTCCATGGCTTTTAAATTAATCTCCTCTCATCCTGATCTTTCGAACCGTATGTTTTTTCACACTGCTGATGTTTTGAATGTTACTGATGGTTTCCAAGAGTACGAGGTTGTTTTTCTTGCTGCTCTTGTTGGTTTGGATAAGGATGAGAAAGTTAAGATTTTGAATCATTTGTCTCAATATATGGCTCCTGGTTCTTATCTGATGCTCAGAAGTGCTCATGGAGCTAGAGCTTTTCTTTACCCTGTTGTTGATGTTTCTGATCTTTCTGCTTCTGGTTTTGAGGTTCTTTCTGTCTTTCATCCTACTGATGAGGTTATTAATTCTGTTGTTATTGCTCGTAAAGCTTTTAATGTGTTGCCTGTTGGAAGAAACTTTAACGCCGACGACGATGATGATAAGAAAGAAGGTGTTCTCAACCCCATTATATTGGCTAATAAGTGCTCTGGATTTCAGACCTTCAATCCCATGATTGAGGAGTTTGCCATGGAAGAGCAGCTCTCATGA 1005 39.6 MVCKQEELLLKTVSELYEQISSLDSLKPCKNVDMLFTNLVLTCMSHTPSPLDITKLCQTKTHQEMRSNLIKLCGEAEGLLEIHFSTILSSFNNPLENLNLFPYYSNYLKLSLLEFNILKTHWHSPLLLPSKIAFLGSGPLPLTSIVLASNHLKSTTFHNFDIDPLANSMAFKLISSHPDLSNRMFFHTADVLNVTDGFQEYEVVFLAALVGLDKDEKVKILNHLSQYMAPGSYLMLRSAHGARAFLYPVVDVSDLSASGFEVLSVFHPTDEVINSVVIARKAFNVLPVGRNFNADDDDDKKEGVLNPIILANKCSGFQTFNPMIEEFAMEEQLS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12293431 12294435 + evm.model.ptg000016l.233 HCH10g0927 553000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0927 334 PANTHER NICOTIANAMINE SYNTHASE 3 6 290 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0927 334 Pfam Nicotianamine synthase protein 5 284 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0927 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 142 261 IPR029063 -
HCH10g0927 334 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 286 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0927 334 Gene3D Vaccinia Virus protein VP39 7 283 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0927 HCH-Chr10:12293431 HCH8g0054 HCH-Chr8:2965696 6.20E-106 dispersed
HCH10g0926 HCH-Chr10:12181963 HCH10g0927 HCH-Chr10:12293431 1.40E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0927 K05953 - rcu:8269821 411.764