Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0927 ATGGTTTGCAAGCAAGAAGAGCTTCTGTTGAAAACAGTAAGCGAATTATACGAGCAGATTTCAAGCCTCGACAGCCTGAAACCTTGTAAAAATGTCGACATGCTTTTCACAAACCTAGTTTTGACATGCATGTCTCACACCCCCTCACCCCTCGACATCACTAAGCTTTGTCAAACCAAAACCCATCAAGAAATGAGGTCAAATCTCATCAAGCTCTGTGGTGAAGCTGAGGGGCTTTTAGAGATTCATTTTTCAACTATTTTGTCCTCTTTTAATAACCCACTTGAGAATCTCAATCTTTTCCCTTACTATTCCAATTACCTTAAACTCTCTCTCTTGGAATTCAATATTCTCAAAACTCATTGGCACTCCCCTCTTCTTTTGCCTTCTAAAATTGCCTTTCTCGGCTCTGGTCCACTCCCTCTCACCTCTATTGTTTTGGCTTCAAATCATCTTAAATCCACCACTTTTCATAACTTTGATATTGACCCGTTAGCCAATTCCATGGCTTTTAAATTAATCTCCTCTCATCCTGATCTTTCGAACCGTATGTTTTTTCACACTGCTGATGTTTTGAATGTTACTGATGGTTTCCAAGAGTACGAGGTTGTTTTTCTTGCTGCTCTTGTTGGTTTGGATAAGGATGAGAAAGTTAAGATTTTGAATCATTTGTCTCAATATATGGCTCCTGGTTCTTATCTGATGCTCAGAAGTGCTCATGGAGCTAGAGCTTTTCTTTACCCTGTTGTTGATGTTTCTGATCTTTCTGCTTCTGGTTTTGAGGTTCTTTCTGTCTTTCATCCTACTGATGAGGTTATTAATTCTGTTGTTATTGCTCGTAAAGCTTTTAATGTGTTGCCTGTTGGAAGAAACTTTAACGCCGACGACGATGATGATAAGAAAGAAGGTGTTCTCAACCCCATTATATTGGCTAATAAGTGCTCTGGATTTCAGACCTTCAATCCCATGATTGAGGAGTTTGCCATGGAAGAGCAGCTCTCATGA 1005 39.6 MVCKQEELLLKTVSELYEQISSLDSLKPCKNVDMLFTNLVLTCMSHTPSPLDITKLCQTKTHQEMRSNLIKLCGEAEGLLEIHFSTILSSFNNPLENLNLFPYYSNYLKLSLLEFNILKTHWHSPLLLPSKIAFLGSGPLPLTSIVLASNHLKSTTFHNFDIDPLANSMAFKLISSHPDLSNRMFFHTADVLNVTDGFQEYEVVFLAALVGLDKDEKVKILNHLSQYMAPGSYLMLRSAHGARAFLYPVVDVSDLSASGFEVLSVFHPTDEVINSVVIARKAFNVLPVGRNFNADDDDDKKEGVLNPIILANKCSGFQTFNPMIEEFAMEEQLS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12293431 12294435 + evm.model.ptg000016l.233 HCH10g0927 553000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0927 334 PANTHER NICOTIANAMINE SYNTHASE 3 6 290 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0927 334 Pfam Nicotianamine synthase protein 5 284 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0927 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 142 261 IPR029063 -
HCH10g0927 334 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 286 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
HCH10g0927 334 Gene3D Vaccinia Virus protein VP39 7 283 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0927 K05953 - - rcu:8269821 411.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0927 HCH-Chr10:12293431 HCH8g0054 HCH-Chr8:2965696 6.20E-106 dispersed
HCH10g0926 HCH-Chr10:12181963 HCH10g0927 HCH-Chr10:12293431 1.40E-98 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 65.5 4.2e-99 358.2
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT1G09240 57.1 2.1e-95 345.9
HCH10g0927 . 5 334 Nicotianamine Synthase Gene Family AT1G09240 55.4 4.5e-93 338.2
HCH8g1022 . 19 284 Nicotianamine Synthase Gene Family AT1G09240 54.8 3.2e-75 278.9
HCH10g0926 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 63.8 1.6e-98 356.3
HCH8g0054 . 3 320 Nicotianamine Synthase Gene Family AT1G56430 55.9 1.4e-97 353.2
HCH10g0927 . 5 334 Nicotianamine Synthase Gene Family AT1G56430 55.8 6.3e-95 344.4
HCH8g1022 . 21 284 Nicotianamine Synthase Gene Family AT1G56430 54.5 7.7e-77 284.3
HCH10g0927 . 1 281 Nicotianamine Synthase Gene Family AT5G04950 60.9 7.6e-93 337.4
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 60.2 3.8e-92 335.1
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT5G04950 53.7 1.4e-91 333.2
HCH8g0054 . 1 323 Nicotianamine Synthase Gene Family AT5G56080 53.8 1.3e-92 336.7
HCH10g0926 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 60.1 5.5e-91 331.3
HCH10g0927 . 1 281 Nicotianamine Synthase Gene Family AT5G56080 59.6 3.5e-90 328.6
HCH8g1022 . 20 284 Nicotianamine Synthase Gene Family AT5G56080 50.7 2.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125