Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0931 ATGGAAGAGTTTTACAGGCTTAACAATAATGTATTATCATACCAAACTGATGTTTTGGGAGGTGAAGTAATTTCCAGCATGAGCTGTGGTGGGATTGATGGAGCAATGATGGTGGATGATATGTTTCATCTTCAACAAGTTGAAACTGAGGCCACCATTGGATTGAACATGTCTGACATGATCAAGACTCAGATTGTCAATCATCCTCTTTATCCAAATTTAGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCATCTCTTCTTGAAGAAATTGGGCTTGAAAACCACCCTACTAGCAGCTCCTGCATCGAGTTAGGGGCTGATCCTCAACTGGATAATTTTATGGAATCATATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAGCCGTTCGATGAAGCGACCACGTTCTTGAGCAACATTGAATTGGAGCTAAGCAACCTTTGCAAAGGATCATTCAGCAGAACATCAGATTCTCTCTCTGCTATGAATGAAGAAGTAACTGGGACTTCAGAGGAAGAACCAAGTTATGGAGAGGTGGAAATGGTAGGAGATCAGAATTCATTTTGCACTCAGAAAACTAACCAAGACATCAAAGGAATGCTCCTCAAGAAATACAGTGGCTATCTTAGCAGTTTGAAGAAGGAATTTTTGAAGAAGAGAAAGAAAGAGAAGCTTCCAAAGGATGCAAGGATGGCTTTATTTGATTGGTGGAACACTCATTATAAATGGCCTTATCCCACAGAAGAGCAGAAATCCAAACTATCTGAAATAACTGGTTTGGACCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGGAAGCGACATTGGAAGCCGCCTGAAGATATGAGATTTGCTCTCATGGACGGTAGCGGTAACAGCATCAAAGTATCGAATTTGTATAACAATGGAGAAACTGAAGGCCATGTAATTTGA 963 40.19 MEEFYRLNNNVLSYQTDVLGGEVISSMSCGGIDGAMMVDDMFHLQQVETEATIGLNMSDMIKTQIVNHPLYPNLVSAYIECQKVGAPPQVASLLEEIGLENHPTSSSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATTFLSNIELELSNLCKGSFSRTSDSLSAMNEEVTGTSEEEPSYGEVEMVGDQNSFCTQKTNQDIKGMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEQKSKLSEITGLDQKQINNWFINQRKRHWKPPEDMRFALMDGSGNSIKVSNLYNNGETEGHVI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12431527 12434353 - evm.model.ptg000016l.229 HCH10g0931 553004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0931 320 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH10g0931 320 Pfam KNOX1 domain 61 102 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH10g0931 320 ProSitePatterns 'Homeobox' domain signature. 263 286 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH10g0931 320 Gene3D - 223 295 - -
HCH10g0931 320 Pfam Homeobox KN domain 245 284 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH10g0931 320 SMART ELK_2 205 226 IPR005539 GO:0003677(InterPro)
HCH10g0931 320 SMART HOX_1 227 292 IPR001356 GO:0003677(InterPro)
HCH10g0931 320 SUPERFAMILY Homeodomain-like 227 297 IPR009057 -
HCH10g0931 320 CDD homeodomain 237 288 IPR001356 GO:0003677(InterPro)
HCH10g0931 320 ProSiteProfiles ELK domain profile. 205 225 IPR005539 GO:0003677(InterPro)
HCH10g0931 320 SMART KNOX2_2 107 158 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH10g0931 320 Pfam ELK domain 205 226 IPR005539 GO:0003677(InterPro)
HCH10g0931 320 SMART KNOX1_2 59 103 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH10g0931 320 ProSiteProfiles 'Homeobox' domain profile. 225 288 IPR001356 GO:0003677(InterPro)
HCH10g0931 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 58 298 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0931 HCH-Chr10:12431527 HCH8g1394 HCH-Chr8:48650714 7.60E-69 dispersed
HCH10g0931 HCH-Chr10:12431527 HCH1g1049 HCH-Chr1:58343048 6.70E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32466 PF03791 KNOX2 3.60E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0931 - - - 0.0