Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0931 | ATGGAAGAGTTTTACAGGCTTAACAATAATGTATTATCATACCAAACTGATGTTTTGGGAGGTGAAGTAATTTCCAGCATGAGCTGTGGTGGGATTGATGGAGCAATGATGGTGGATGATATGTTTCATCTTCAACAAGTTGAAACTGAGGCCACCATTGGATTGAACATGTCTGACATGATCAAGACTCAGATTGTCAATCATCCTCTTTATCCAAATTTAGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCATCTCTTCTTGAAGAAATTGGGCTTGAAAACCACCCTACTAGCAGCTCCTGCATCGAGTTAGGGGCTGATCCTCAACTGGATAATTTTATGGAATCATATTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAGCCGTTCGATGAAGCGACCACGTTCTTGAGCAACATTGAATTGGAGCTAAGCAACCTTTGCAAAGGATCATTCAGCAGAACATCAGATTCTCTCTCTGCTATGAATGAAGAAGTAACTGGGACTTCAGAGGAAGAACCAAGTTATGGAGAGGTGGAAATGGTAGGAGATCAGAATTCATTTTGCACTCAGAAAACTAACCAAGACATCAAAGGAATGCTCCTCAAGAAATACAGTGGCTATCTTAGCAGTTTGAAGAAGGAATTTTTGAAGAAGAGAAAGAAAGAGAAGCTTCCAAAGGATGCAAGGATGGCTTTATTTGATTGGTGGAACACTCATTATAAATGGCCTTATCCCACAGAAGAGCAGAAATCCAAACTATCTGAAATAACTGGTTTGGACCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGGAAGCGACATTGGAAGCCGCCTGAAGATATGAGATTTGCTCTCATGGACGGTAGCGGTAACAGCATCAAAGTATCGAATTTGTATAACAATGGAGAAACTGAAGGCCATGTAATTTGA | 963 | 40.19 | MEEFYRLNNNVLSYQTDVLGGEVISSMSCGGIDGAMMVDDMFHLQQVETEATIGLNMSDMIKTQIVNHPLYPNLVSAYIECQKVGAPPQVASLLEEIGLENHPTSSSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEATTFLSNIELELSNLCKGSFSRTSDSLSAMNEEVTGTSEEEPSYGEVEMVGDQNSFCTQKTNQDIKGMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALFDWWNTHYKWPYPTEEQKSKLSEITGLDQKQINNWFINQRKRHWKPPEDMRFALMDGSGNSIKVSNLYNNGETEGHVI | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12431527 | 12434353 | - | evm.model.ptg000016l.229 | HCH10g0931 | 553004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0931 | 320 | Pfam | KNOX2 domain | 111 | 157 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH10g0931 | 320 | Pfam | KNOX1 domain | 61 | 102 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH10g0931 | 320 | ProSitePatterns | 'Homeobox' domain signature. | 263 | 286 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH10g0931 | 320 | Gene3D | - | 223 | 295 | - | - | |
HCH10g0931 | 320 | Pfam | Homeobox KN domain | 245 | 284 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH10g0931 | 320 | SMART | ELK_2 | 205 | 226 | IPR005539 | GO:0003677(InterPro) | |
HCH10g0931 | 320 | SMART | HOX_1 | 227 | 292 | IPR001356 | GO:0003677(InterPro) | |
HCH10g0931 | 320 | SUPERFAMILY | Homeodomain-like | 227 | 297 | IPR009057 | - | |
HCH10g0931 | 320 | CDD | homeodomain | 237 | 288 | IPR001356 | GO:0003677(InterPro) | |
HCH10g0931 | 320 | ProSiteProfiles | ELK domain profile. | 205 | 225 | IPR005539 | GO:0003677(InterPro) | |
HCH10g0931 | 320 | SMART | KNOX2_2 | 107 | 158 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH10g0931 | 320 | Pfam | ELK domain | 205 | 226 | IPR005539 | GO:0003677(InterPro) | |
HCH10g0931 | 320 | SMART | KNOX1_2 | 59 | 103 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH10g0931 | 320 | ProSiteProfiles | 'Homeobox' domain profile. | 225 | 288 | IPR001356 | GO:0003677(InterPro) | |
HCH10g0931 | 320 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 58 | 298 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0931 | HCH-Chr10:12431527 | HCH8g1394 | HCH-Chr8:48650714 | 7.60E-69 | dispersed | |
HCH10g0931 | HCH-Chr10:12431527 | HCH1g1049 | HCH-Chr1:58343048 | 6.70E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32466 | PF03791 | KNOX2 | 3.60E-21 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0931 | - | - | - | 0.0 |