Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0949 ATGGCGGGTGAGGAGATTACAGCAATCTTTGGTATGATTGTACTACAAGTATGCTATGCAGGGTTGAATATAATATCAAAGCTGGCCATGCAATCCGAGATGAACCCATTCGTTCTTCTTACTTACAGGCAGATATTTGGAACATTAGCCATTGCTCCTTTTGCCTATTTTTCTGAGATCAGAAAAACAAGACCCAAGATCACCATTTCAGTTTTATTCCAAATCCTACTGTGCTCCTTGTCAGGAGCAACAGGAAACCAGATGTTTTTCTTAATCGGGTTAAAATTTACAAACCCCACAATTTCAAGTGCCATGACCAATGTGCTTCCAGCAGCTACTTTTGTCCTTGCTGTTTTTTACAGACAAGAGAGTGTGAGAATCAAGACCAAGCCTGGGTTGGCAAAGGTAACAGGAACAATTGTATGTGTATGTGGAGCAATGCTCTTATCATTCTACCATGGACACACCATTGGCTTGGGTGAATCCAAAATCCATTGGGCATTTGTTCAAAAATTGAACGAAAGAAGCCCGACCGGCCAAAAGCATCGGGTCCTCGGCTCCATTTTGTTGCTCTGCAGCTCTTTTGCTTGGGCATCATGGTTTGTGATCCAAGCAAGACTAAGCACCACGTTTAAAGCTCCTTACACAATTACTACACTGCTGTGTTTTATGGCCTCCATTGAATGTGGACTTGTAGCTATAATTTCAGAACACAACCTTGCTGCTTGGTCATTGAAAAGTACAATCAGACTCGTTGGAGCTCTTTACACGGGAATTATATGCTCTGGATTGACATTTGCAATCACTTCATGGATTATACAGAGGAAAGGCTCTCTTTATGTCTCCATTTTCACTCCTTTATTGCTTATCATTGTAGCCATCCTCAGCTGGGCTCTACTCGGCGAAAAACTATACGTCGGAACTGCTATAGGCTCTGCTTTGATTGTTATTGGGCTGTATGCTGTGCTGTGGGGGAAGTCCAAAGAGATGAAACTGCAAGAAAACATGGAAAAGACAAATGAGAGTAATAATGATGAGAAAGAGGACATGGAATCACAGATTACTTCAAATGGAAATTCTTTTGTTCCATCTGAAAGAGAAGAGAAAGTGACAAGCAAATAA 1122 41.35 MAGEEITAIFGMIVLQVCYAGLNIISKLAMQSEMNPFVLLTYRQIFGTLAIAPFAYFSEIRKTRPKITISVLFQILLCSLSGATGNQMFFLIGLKFTNPTISSAMTNVLPAATFVLAVFYRQESVRIKTKPGLAKVTGTIVCVCGAMLLSFYHGHTIGLGESKIHWAFVQKLNERSPTGQKHRVLGSILLLCSSFAWASWFVIQARLSTTFKAPYTITTLLCFMASIECGLVAIISEHNLAAWSLKSTIRLVGALYTGIICSGLTFAITSWIIQRKGSLYVSIFTPLLLIIVAILSWALLGEKLYVGTAIGSALIVIGLYAVLWGKSKEMKLQENMEKTNESNNDEKEDMESQITSNGNSFVPSEREEKVTSK 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14123680 14125617 - evm.model.ptg000016l.211 HCH10g0949 553022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0949 373 MobiDBLite consensus disorder prediction 334 373 - -
HCH10g0949 373 PANTHER WAT1-RELATED PROTEIN 12 342 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH10g0949 373 MobiDBLite consensus disorder prediction 334 352 - -
HCH10g0949 373 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020(InterPro)
HCH10g0949 373 Pfam EamA-like transporter family 8 150 IPR000620 GO:0016020(InterPro)
HCH10g0949 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 153 - -
HCH10g0949 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 328 - -
HCH10g0949 373 Coils Coil 329 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0949 HCH-Chr10:14123680 HCH1g0598 HCH-Chr1:54870536 3.90E-64 dispersed
HCH10g0949 HCH-Chr10:14123680 HCH8g0032 HCH-Chr8:1159736 1.80E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0949 - - - 0.0