Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0958 ATGGGCACTGATCTAAACAAAGAATTGTCAAAGAAAACAAGCGTTTTCGGTCTAATGGTATGGGAAGTTATTGGAATTTGTGTTGCTTTATTCATAATAATTATTCTCTGCCTTCTTTCACTATGTTTAACTTCAAGAAAGAAATCTAGAAAAGCCAAAAACGCATACCCTCAAACTAGAATCCCAGCTGTTTCCAAGGAAATAAAAGCCATTAGAGTTGAAAAGGTATTATTACCGTATGATACTTCCTCTGATGATGGAATTCAAATTCACATGGGAATGGAGAAGTTGAAGACTATTAGCAGTGAGTCATTGGAGAAGATAGAGAAGATGGGTTGTGAATCTCAATCAGCAGATGAAGGGAGTTCTTGTACTGTTACTACATATAGACATTGCTCATCTCCAATCACTGTTGCTTCTCCACTCTCTGATCTTCCAGTTCCAGCTGAATTCTGTCACTTGGGATGGGGTTATTGGTTTACGATGAGAGAACTCGATATCGCCACGAACTTCTTTTCGCAAGAAAATGTTATTGGAGAAGGTGGCTATGGAGTCGTTTACAGAGGATGTTTGCTTAATGGAACACCAGTTGCAGTCAAGAAGATTCTCAATAACCAGGGCCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCAATAGGGCATGTGCGTCATAAGAATTTGGTTCGTCTTCTAGGGTACTGCATAGAAGGGACTCATAGGATGCTTGTGTATGAATATGTAAACAATGGAAACTTAGAACTATGGTTGCATGGATCTGTGGGTCAGAATGGATTTCTCACTTGGGAGGCTCGCATGAAGATTATGCTTGGCACAGCTAAAGGACTTGCATACTTGCATGAAGCAATTGAACCAAAAGTTGTGCACCGAGATATAAAGTCCAGCAATATATTGATCGATGATGATTTCAACGCCAAGGTATCTGATTTTGGCCTCGCAAAGTTGCTGGATGCTGGGAAAACTCACGTCACAACACGAGTTATGGGGACATTTGGATACGTCGCTCCTGAGTATGCAAAGACAGGTCTTCTAAACGAAAAAAGTGATGTTTATAGCTTTGGAGTCGTGCTCTTAGAAATAATAACGGGAAGAGATCCCGTCGACTATGGACGGCCAACCAAGGAGGTGAATTTGATAGACTGGCTGAAATTGATGGTTGGAAGCAGACGGTTTGAAGAAGTGATAGACCCAAATATAGGAGTGAGGCCGTCAACAAGAGCTTTAAAACGAGTTTTATTGGTTGCTTTAAGATGTGTGGATCAAGATTATGGGAAGAGACCAAAAATGGGCCAAGTGGTCCGTATGCTTGAATCTGAAGAGTTTTATTTTCCCTCTAGACGTTAG 1365 40.73 MGTDLNKELSKKTSVFGLMVWEVIGICVALFIIIILCLLSLCLTSRKKSRKAKNAYPQTRIPAVSKEIKAIRVEKVLLPYDTSSDDGIQIHMGMEKLKTISSESLEKIEKMGCESQSADEGSSCTVTTYRHCSSPITVASPLSDLPVPAEFCHLGWGYWFTMRELDIATNFFSQENVIGEGGYGVVYRGCLLNGTPVAVKKILNNQGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLELWLHGSVGQNGFLTWEARMKIMLGTAKGLAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLDAGKTHVTTRVMGTFGYVAPEYAKTGLLNEKSDVYSFGVVLLEIITGRDPVDYGRPTKEVNLIDWLKLMVGSRRFEEVIDPNIGVRPSTRALKRVLLVALRCVDQDYGKRPKMGQVVRMLESEEFYFPSRR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14908058 14910823 - evm.model.ptg000016l.202 HCH10g0958 553031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0958 454 Pfam Protein kinase domain 173 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0958 454 FunFam Putative receptor-like protein kinase 154 247 - -
HCH10g0958 454 Gene3D Phosphorylase Kinase; domain 1 155 247 - -
HCH10g0958 454 FunFam Putative receptor-like serine/threonine-protein kinase 248 454 - -
HCH10g0958 454 Gene3D Transferase(Phosphotransferase) domain 1 248 450 - -
HCH10g0958 454 SMART serkin_6 172 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0958 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0958 454 CDD STKc_IRAK 178 444 - -
HCH10g0958 454 ProSiteProfiles Protein kinase domain profile. 172 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0958 454 ProSitePatterns Protein kinases ATP-binding region signature. 178 201 IPR017441 GO:0005524(InterPro)
HCH10g0958 454 PANTHER OS01G0323000 PROTEIN 1 452 IPR052232 -
HCH10g0958 454 SUPERFAMILY Protein kinase-like (PK-like) 151 445 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0958 HCH-Chr10:14908058 HCH7g0046 HCH-Chr7:325328 2.30E-159 dispersed
HCH10g0958 HCH-Chr10:14908058 HCH7g0902 HCH-Chr7:34129620 1.20E-46 wgd
HCH10g0958 HCH-Chr10:14908058 HCH8g0026 HCH-Chr8:1079082 2.00E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81002 PF00069 Pkinase 4.50E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0958 - - - 0.0