Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0958 | ATGGGCACTGATCTAAACAAAGAATTGTCAAAGAAAACAAGCGTTTTCGGTCTAATGGTATGGGAAGTTATTGGAATTTGTGTTGCTTTATTCATAATAATTATTCTCTGCCTTCTTTCACTATGTTTAACTTCAAGAAAGAAATCTAGAAAAGCCAAAAACGCATACCCTCAAACTAGAATCCCAGCTGTTTCCAAGGAAATAAAAGCCATTAGAGTTGAAAAGGTATTATTACCGTATGATACTTCCTCTGATGATGGAATTCAAATTCACATGGGAATGGAGAAGTTGAAGACTATTAGCAGTGAGTCATTGGAGAAGATAGAGAAGATGGGTTGTGAATCTCAATCAGCAGATGAAGGGAGTTCTTGTACTGTTACTACATATAGACATTGCTCATCTCCAATCACTGTTGCTTCTCCACTCTCTGATCTTCCAGTTCCAGCTGAATTCTGTCACTTGGGATGGGGTTATTGGTTTACGATGAGAGAACTCGATATCGCCACGAACTTCTTTTCGCAAGAAAATGTTATTGGAGAAGGTGGCTATGGAGTCGTTTACAGAGGATGTTTGCTTAATGGAACACCAGTTGCAGTCAAGAAGATTCTCAATAACCAGGGCCAAGCAGAGAAAGAATTTAGAGTGGAAGTTGAAGCAATAGGGCATGTGCGTCATAAGAATTTGGTTCGTCTTCTAGGGTACTGCATAGAAGGGACTCATAGGATGCTTGTGTATGAATATGTAAACAATGGAAACTTAGAACTATGGTTGCATGGATCTGTGGGTCAGAATGGATTTCTCACTTGGGAGGCTCGCATGAAGATTATGCTTGGCACAGCTAAAGGACTTGCATACTTGCATGAAGCAATTGAACCAAAAGTTGTGCACCGAGATATAAAGTCCAGCAATATATTGATCGATGATGATTTCAACGCCAAGGTATCTGATTTTGGCCTCGCAAAGTTGCTGGATGCTGGGAAAACTCACGTCACAACACGAGTTATGGGGACATTTGGATACGTCGCTCCTGAGTATGCAAAGACAGGTCTTCTAAACGAAAAAAGTGATGTTTATAGCTTTGGAGTCGTGCTCTTAGAAATAATAACGGGAAGAGATCCCGTCGACTATGGACGGCCAACCAAGGAGGTGAATTTGATAGACTGGCTGAAATTGATGGTTGGAAGCAGACGGTTTGAAGAAGTGATAGACCCAAATATAGGAGTGAGGCCGTCAACAAGAGCTTTAAAACGAGTTTTATTGGTTGCTTTAAGATGTGTGGATCAAGATTATGGGAAGAGACCAAAAATGGGCCAAGTGGTCCGTATGCTTGAATCTGAAGAGTTTTATTTTCCCTCTAGACGTTAG | 1365 | 40.73 | MGTDLNKELSKKTSVFGLMVWEVIGICVALFIIIILCLLSLCLTSRKKSRKAKNAYPQTRIPAVSKEIKAIRVEKVLLPYDTSSDDGIQIHMGMEKLKTISSESLEKIEKMGCESQSADEGSSCTVTTYRHCSSPITVASPLSDLPVPAEFCHLGWGYWFTMRELDIATNFFSQENVIGEGGYGVVYRGCLLNGTPVAVKKILNNQGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLELWLHGSVGQNGFLTWEARMKIMLGTAKGLAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLDAGKTHVTTRVMGTFGYVAPEYAKTGLLNEKSDVYSFGVVLLEIITGRDPVDYGRPTKEVNLIDWLKLMVGSRRFEEVIDPNIGVRPSTRALKRVLLVALRCVDQDYGKRPKMGQVVRMLESEEFYFPSRR | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 14908058 | 14910823 | - | evm.model.ptg000016l.202 | HCH10g0958 | 553031 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0958 | 454 | Pfam | Protein kinase domain | 173 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g0958 | 454 | FunFam | Putative receptor-like protein kinase | 154 | 247 | - | - | |
HCH10g0958 | 454 | Gene3D | Phosphorylase Kinase; domain 1 | 155 | 247 | - | - | |
HCH10g0958 | 454 | FunFam | Putative receptor-like serine/threonine-protein kinase | 248 | 454 | - | - | |
HCH10g0958 | 454 | Gene3D | Transferase(Phosphotransferase) domain 1 | 248 | 450 | - | - | |
HCH10g0958 | 454 | SMART | serkin_6 | 172 | 450 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g0958 | 454 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 294 | 306 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH10g0958 | 454 | CDD | STKc_IRAK | 178 | 444 | - | - | |
HCH10g0958 | 454 | ProSiteProfiles | Protein kinase domain profile. | 172 | 449 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g0958 | 454 | ProSitePatterns | Protein kinases ATP-binding region signature. | 178 | 201 | IPR017441 | GO:0005524(InterPro) | |
HCH10g0958 | 454 | PANTHER | OS01G0323000 PROTEIN | 1 | 452 | IPR052232 | - | |
HCH10g0958 | 454 | SUPERFAMILY | Protein kinase-like (PK-like) | 151 | 445 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0958 | HCH-Chr10:14908058 | HCH7g0046 | HCH-Chr7:325328 | 2.30E-159 | dispersed | |
HCH10g0958 | HCH-Chr10:14908058 | HCH7g0902 | HCH-Chr7:34129620 | 1.20E-46 | wgd | |
HCH10g0958 | HCH-Chr10:14908058 | HCH8g0026 | HCH-Chr8:1079082 | 2.00E-179 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81002 | PF00069 | Pkinase | 4.50E-49 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0958 | - | - | - | 0.0 |