Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0972 | ATGGAGGAAAAACTCCTCTCTCCTTGGGCTTTGTCAGTTGAAAAGTGTTTAGAATCGTTCAATGTGAGACTCGATATTGGTCTGAGCGATCACGTAGTTGAGAAGTGTCGTGAGAGGTATGGTTGGAATGAGCTCTCCAAGGAGAAAGGGAAGCCGCTATGGCATCTTGTATTGGAACAATTTGATGATGTGCTAGTTAAGATTCTTCTTGTTGCGGCCTTTATCTCGTTTATTCTAGCATATGTCGGCGGAGGCGAATCTGACGAATCTGGTTTTGAAGCCTATGTAGAGCCTTTTGTCATTGTCTTAATTCTTGTTCTTAATGCAGTTGTTGGAGTATGGCAGGAGAGTAATGCTGAAAAGGCCCTTGAGGCCTTGAAAGAAATGCAATGCGAATCTGCAAAGGTTTTGAGGAATGGTTATCTAGTGCCAGATTTGCAAGCTAGAGAACTTGTTCCTGGCGATATCGTGGAATTACGAGTTGGAGACAGAGTCCCTGCTGATATGAGGGTTGCAGCTTTGAAAACCTCAACTTTAAGAGTTGAGCAGAGCTCATTGACCGGAGAGGCAATGCCTGTTCTTAAAGGCACAGACACTTTACTCACTGATGACTGCGAGTTGCAAGCTAAGGAAAATATGGTTTTTTCTGGCACGACAGTTGTGAATGGAACCTCTGTTTGTATTGTTGTTGGCACTGGGATGAATACTGAAATTGGAAAGATACAAACACAGATACACGAGGCTTCTCTAGAAGAGAGCGATACACCTTTAAAGAAGAAGTTGGATGAATTTGGTAACAGGCTTACTACTGCAATTGGGCTTGTTTGCCTCATTGTATGGGTTATAAACTACAAAAATTTCCTTTCTTGGGATGTTAATGATGGTTGGCCTACAAATATACAGTTTTCTTTTGAGAAGTGTACGTATTATTTTAAGATCGCCGTTGCCCTTGCAGTGGCTGCTATTCCAGAAGGCCTTCCAGCTGTTATCACTACTTGTTTAGCTTTAGGTACAAGAAAAATGACACGGAAAAATGCAATTGTTCGTAAGCTTCCAAGTGTGGAGACCCTGGGATGCACAACTGTGATTTGCTCAGATAAAACTGGAACCTTAACAACAAATCAGATGTCTGTGACAGAGTTCTTTACTTTGGGAGGGAAAACTACTGCTTCTCGAATTATATCGGTTGAAGGCACAACTTATGACCCCAAGGATGGTGGGATTGTTGATTGGAATTGCTATAACATGGACGCTAACTTTCAAGCAGTGGCGGAAATATCTGCTATTTGCAATGATGCTGGGATTTACTTGGATGGTCATCTCTTCCAAGCCTCAGGTTTGCCTACTGAGGCAGCTCTGAAGGTTTTGGTTGAAAAGATGGGAATTCCAGATTCAAAACAAAGGAACAACATTTTTGACACAGAAGTTGCTGCAAAACATGTGATTAATTCATCCCAAGTTAAATTAGGTTGTTGTGAATGGTGGACAAAAATATCTAAAAGAGTTGCCACACTGGAGTTTGACCGCATTCGAAAATCAATGAGTGTTATTGTCAGAGAGCGATCAGGGAAAAATCGACTTCTGGTTAAGGGCGCTGTCGAAGGTTTACTGGAGCGTACTTTACATGTGCAACTTGCTGATGGATCCCTTGTTCAATTGGATGAAAATTGCAGGCAACTACTGCTCTCTACGCTTTTGGAGATGAGTTCTAAGGGGTTACGATGTTTGGGATTGGCATATAAAGATGACTTGGGAGAATTTTCAAATTATGATTCTGAGAGCCATCCTGCTCACAAGAAGCTGTTGGATCCAGCTTGCTATTCCTCCATTGAAAGTGAACTAGTTTTCGTGGGAATTGTCGGTCTAAGGGACCCTCCTCGTGGCGAAGTTCACAAAGCAATTGATGATTGCAGAGGAGCTGGTGTTACGGTTATGGTAATTACGGGTGATAATAAATCTACAGCTGAGTCTATTTGTCGGGAAATCGGATTATTCTCCAGAGATGAGAGTCTCACAGGGAGCAGTTTCACTGGGAAAGAGTTCATGGGCCTTTCCACTTCACAACAAAAAGAAGTGTTATCAAAACCTGGAGGGAAGGTTTTCTCTCGTGCAGAGCCACGGCATAAGCAAGACATTGTGAGGCTGCTGAAGGAGATGGGAGAGATTGTTGCAATGACTGGTGATGGAGTAAATGATGCACCTGCACTTAAGCTTGCTGACATTGGAATAGCCATGGGAATTACTGGTACTGAGGTTGCTAAAGAAGCTTCAGATATGGTTTTAGCAGATGATAATTTCAGTACTATTGTAGCGGCTATTGCAGAGGGACGCTCAATTTATGACAATATGAAGGCCTTCATAAGGTATATGATATCATCCAATGTTGGAGAGGTAATATCAATATTTTTGACTGCTGCTCTTGGGATACCAGAGTGCATGATTCCGGTGCAACTTCTGTGGGTAAACTTAGTAACTGATGGTCCTCCTGCAACAGCTCTTGGTTTCAATCCGGCTGATGTTGACATAATGCAGAAGCCGCCCCGTAAAAGTGATGATGCTCTTATAAGCGCCTGGGTTCTTCTCCGTTACTTGGTCATTGGCTCTTATGTCGGCCTGGCAACTGTTGGCATCTTCATCTTATGGTACACTCAAGCTTCATTTCTCGGCATCAACCTAGTCAGTGACGGGCACACTCTCGTCGAACTTTCTCAACTTCGAAATTGGCGAGAGTGCAGCTCATGGTCAAATTTCACAGTAAATCCGCTTAATATAGGTGGGGGTCGCACAATCACCTTTTCGAACCCCTGTGACTATTTTTCAACTGGAAAAGTGAAGGCCATGACTCTGTCACTCTCTGTCTTGGTAGCGATTGAAATGTTCAATTCCCTGAATGCTTTATCAGAAGAAAATGGTTTGCTCATAATGCCACCTTGGAGGAACCCCTGGCTTTTGGTTGCGATGTCTGCCTCATTTGGACTGCATTGCTTAATTCTCTATGTTCCATTTTTAGCAGATGTCTTCGGCATCGTTCCGTTGAACCTAAAGGAATGGATTCTGGTTTTATTGATTTCAGCACCAGTGATTCTTCTTGATGAGGTTCTTAAATTTGTACTCCGAAGCAGAAGACGAGTGGCGAAGAAAGAAAAGATGGCATGA | 3156 | 42.84 | MEEKLLSPWALSVEKCLESFNVRLDIGLSDHVVEKCRERYGWNELSKEKGKPLWHLVLEQFDDVLVKILLVAAFISFILAYVGGGESDESGFEAYVEPFVIVLILVLNAVVGVWQESNAEKALEALKEMQCESAKVLRNGYLVPDLQARELVPGDIVELRVGDRVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTDTLLTDDCELQAKENMVFSGTTVVNGTSVCIVVGTGMNTEIGKIQTQIHEASLEESDTPLKKKLDEFGNRLTTAIGLVCLIVWVINYKNFLSWDVNDGWPTNIQFSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMTRKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTASRIISVEGTTYDPKDGGIVDWNCYNMDANFQAVAEISAICNDAGIYLDGHLFQASGLPTEAALKVLVEKMGIPDSKQRNNIFDTEVAAKHVINSSQVKLGCCEWWTKISKRVATLEFDRIRKSMSVIVRERSGKNRLLVKGAVEGLLERTLHVQLADGSLVQLDENCRQLLLSTLLEMSSKGLRCLGLAYKDDLGEFSNYDSESHPAHKKLLDPACYSSIESELVFVGIVGLRDPPRGEVHKAIDDCRGAGVTVMVITGDNKSTAESICREIGLFSRDESLTGSSFTGKEFMGLSTSQQKEVLSKPGGKVFSRAEPRHKQDIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVAAIAEGRSIYDNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISAWVLLRYLVIGSYVGLATVGIFILWYTQASFLGINLVSDGHTLVELSQLRNWRECSSWSNFTVNPLNIGGGRTITFSNPCDYFSTGKVKAMTLSLSVLVAIEMFNSLNALSEENGLLIMPPWRNPWLLVAMSASFGLHCLILYVPFLADVFGIVPLNLKEWILVLLISAPVILLDEVLKFVLRSRRRVAKKEKMA | 1051 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 16689031 | 16693492 | - | evm.model.ptg000016l.188 | HCH10g0972 | 553045 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0972 | 1051 | FunFam | Calcium-transporting P-type ATPase, putative | 620 | 771 | - | - | |
| HCH10g0972 | 1051 | NCBIfam | HAD-IC family P-type ATPase | 302 | 389 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g0972 | 1051 | NCBIfam | HAD-IC family P-type ATPase | 699 | 811 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g0972 | 1051 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 9 | 1042 | - | GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER) | |
| HCH10g0972 | 1051 | SFLD | C1.7: P-type atpase like | 345 | 778 | - | - | |
| HCH10g0972 | 1051 | Pfam | E1-E2 ATPase | 129 | 344 | - | - | |
| HCH10g0972 | 1051 | Gene3D | - | 59 | 1039 | - | - | |
| HCH10g0972 | 1051 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 8 | 1042 | IPR023298 | - | |
| HCH10g0972 | 1051 | Gene3D | - | 374 | 625 | IPR023299 | GO:0000166(InterPro) | |
| HCH10g0972 | 1051 | Pfam | haloacid dehalogenase-like hydrolase | 617 | 740 | - | - | |
| HCH10g0972 | 1051 | SUPERFAMILY | HAD-like | 362 | 830 | IPR036412 | - | |
| HCH10g0972 | 1051 | Gene3D | - | 361 | 771 | IPR023214 | - | |
| HCH10g0972 | 1051 | SFLD | p-type atpase | 345 | 778 | IPR044492 | - | |
| HCH10g0972 | 1051 | Gene3D | - | 27 | 248 | - | - | |
| HCH10g0972 | 1051 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 371 | 622 | IPR023299 | GO:0000166(InterPro) | |
| HCH10g0972 | 1051 | SUPERFAMILY | Calcium ATPase, transduction domain A | 134 | 243 | IPR008250 | - | |
| HCH10g0972 | 1051 | FunFam | calcium-transporting ATPase, endoplasmic reticulum-type | 374 | 625 | - | - | |
| HCH10g0972 | 1051 | Coils | Coil | 119 | 139 | - | - | |
| HCH10g0972 | 1051 | PRINTS | P-type cation-transporting ATPase superfamily signature | 726 | 745 | - | - | |
| HCH10g0972 | 1051 | PRINTS | P-type cation-transporting ATPase superfamily signature | 640 | 650 | - | - | |
| HCH10g0972 | 1051 | PRINTS | P-type cation-transporting ATPase superfamily signature | 750 | 762 | - | - | |
| HCH10g0972 | 1051 | PRINTS | P-type cation-transporting ATPase superfamily signature | 364 | 378 | - | - | |
| HCH10g0972 | 1051 | PRINTS | P-type cation-transporting ATPase superfamily signature | 182 | 196 | - | - | |
| HCH10g0972 | 1051 | PRINTS | P-type cation-transporting ATPase superfamily signature | 618 | 629 | - | - | |
| HCH10g0972 | 1051 | Pfam | Cation transport ATPase (P-type) | 428 | 540 | - | - | |
| HCH10g0972 | 1051 | FunFam | ECA1 (ER-TYPE CA2+-ATPASE 1) | 790 | 1044 | - | - | |
| HCH10g0972 | 1051 | FunFam | Calcium-transporting ATPase, putative | 110 | 246 | - | - | |
| HCH10g0972 | 1051 | Pfam | Cation transporting ATPase, C-terminus | 811 | 1037 | IPR006068 | - | |
| HCH10g0972 | 1051 | FunFam | Calcium-transporting ATPase, putative | 214 | 360 | - | - | |
| HCH10g0972 | 1051 | PRINTS | Sodium/potassium-transporting ATPase signature | 357 | 378 | - | - | |
| HCH10g0972 | 1051 | PRINTS | Sodium/potassium-transporting ATPase signature | 979 | 1003 | - | - | |
| HCH10g0972 | 1051 | Pfam | Cation transporter/ATPase, N-terminus | 9 | 76 | IPR004014 | - | |
| HCH10g0972 | 1051 | SMART | Cation_ATPase_N_a_2 | 7 | 81 | IPR004014 | - | |
| HCH10g0972 | 1051 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 366 | 372 | IPR018303 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0972 | HCH-Chr10:16689031 | HCH3g1300 | HCH-Chr3:49579841 | 0.00E+00 | dispersed | |
| HCH10g0972 | HCH-Chr10:16689031 | HCH4g0577 | HCH-Chr4:3802373 | 5.90E-227 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0972 | K01537 | - | vvi:100253574 | 1771.52 |