Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0972 ATGGAGGAAAAACTCCTCTCTCCTTGGGCTTTGTCAGTTGAAAAGTGTTTAGAATCGTTCAATGTGAGACTCGATATTGGTCTGAGCGATCACGTAGTTGAGAAGTGTCGTGAGAGGTATGGTTGGAATGAGCTCTCCAAGGAGAAAGGGAAGCCGCTATGGCATCTTGTATTGGAACAATTTGATGATGTGCTAGTTAAGATTCTTCTTGTTGCGGCCTTTATCTCGTTTATTCTAGCATATGTCGGCGGAGGCGAATCTGACGAATCTGGTTTTGAAGCCTATGTAGAGCCTTTTGTCATTGTCTTAATTCTTGTTCTTAATGCAGTTGTTGGAGTATGGCAGGAGAGTAATGCTGAAAAGGCCCTTGAGGCCTTGAAAGAAATGCAATGCGAATCTGCAAAGGTTTTGAGGAATGGTTATCTAGTGCCAGATTTGCAAGCTAGAGAACTTGTTCCTGGCGATATCGTGGAATTACGAGTTGGAGACAGAGTCCCTGCTGATATGAGGGTTGCAGCTTTGAAAACCTCAACTTTAAGAGTTGAGCAGAGCTCATTGACCGGAGAGGCAATGCCTGTTCTTAAAGGCACAGACACTTTACTCACTGATGACTGCGAGTTGCAAGCTAAGGAAAATATGGTTTTTTCTGGCACGACAGTTGTGAATGGAACCTCTGTTTGTATTGTTGTTGGCACTGGGATGAATACTGAAATTGGAAAGATACAAACACAGATACACGAGGCTTCTCTAGAAGAGAGCGATACACCTTTAAAGAAGAAGTTGGATGAATTTGGTAACAGGCTTACTACTGCAATTGGGCTTGTTTGCCTCATTGTATGGGTTATAAACTACAAAAATTTCCTTTCTTGGGATGTTAATGATGGTTGGCCTACAAATATACAGTTTTCTTTTGAGAAGTGTACGTATTATTTTAAGATCGCCGTTGCCCTTGCAGTGGCTGCTATTCCAGAAGGCCTTCCAGCTGTTATCACTACTTGTTTAGCTTTAGGTACAAGAAAAATGACACGGAAAAATGCAATTGTTCGTAAGCTTCCAAGTGTGGAGACCCTGGGATGCACAACTGTGATTTGCTCAGATAAAACTGGAACCTTAACAACAAATCAGATGTCTGTGACAGAGTTCTTTACTTTGGGAGGGAAAACTACTGCTTCTCGAATTATATCGGTTGAAGGCACAACTTATGACCCCAAGGATGGTGGGATTGTTGATTGGAATTGCTATAACATGGACGCTAACTTTCAAGCAGTGGCGGAAATATCTGCTATTTGCAATGATGCTGGGATTTACTTGGATGGTCATCTCTTCCAAGCCTCAGGTTTGCCTACTGAGGCAGCTCTGAAGGTTTTGGTTGAAAAGATGGGAATTCCAGATTCAAAACAAAGGAACAACATTTTTGACACAGAAGTTGCTGCAAAACATGTGATTAATTCATCCCAAGTTAAATTAGGTTGTTGTGAATGGTGGACAAAAATATCTAAAAGAGTTGCCACACTGGAGTTTGACCGCATTCGAAAATCAATGAGTGTTATTGTCAGAGAGCGATCAGGGAAAAATCGACTTCTGGTTAAGGGCGCTGTCGAAGGTTTACTGGAGCGTACTTTACATGTGCAACTTGCTGATGGATCCCTTGTTCAATTGGATGAAAATTGCAGGCAACTACTGCTCTCTACGCTTTTGGAGATGAGTTCTAAGGGGTTACGATGTTTGGGATTGGCATATAAAGATGACTTGGGAGAATTTTCAAATTATGATTCTGAGAGCCATCCTGCTCACAAGAAGCTGTTGGATCCAGCTTGCTATTCCTCCATTGAAAGTGAACTAGTTTTCGTGGGAATTGTCGGTCTAAGGGACCCTCCTCGTGGCGAAGTTCACAAAGCAATTGATGATTGCAGAGGAGCTGGTGTTACGGTTATGGTAATTACGGGTGATAATAAATCTACAGCTGAGTCTATTTGTCGGGAAATCGGATTATTCTCCAGAGATGAGAGTCTCACAGGGAGCAGTTTCACTGGGAAAGAGTTCATGGGCCTTTCCACTTCACAACAAAAAGAAGTGTTATCAAAACCTGGAGGGAAGGTTTTCTCTCGTGCAGAGCCACGGCATAAGCAAGACATTGTGAGGCTGCTGAAGGAGATGGGAGAGATTGTTGCAATGACTGGTGATGGAGTAAATGATGCACCTGCACTTAAGCTTGCTGACATTGGAATAGCCATGGGAATTACTGGTACTGAGGTTGCTAAAGAAGCTTCAGATATGGTTTTAGCAGATGATAATTTCAGTACTATTGTAGCGGCTATTGCAGAGGGACGCTCAATTTATGACAATATGAAGGCCTTCATAAGGTATATGATATCATCCAATGTTGGAGAGGTAATATCAATATTTTTGACTGCTGCTCTTGGGATACCAGAGTGCATGATTCCGGTGCAACTTCTGTGGGTAAACTTAGTAACTGATGGTCCTCCTGCAACAGCTCTTGGTTTCAATCCGGCTGATGTTGACATAATGCAGAAGCCGCCCCGTAAAAGTGATGATGCTCTTATAAGCGCCTGGGTTCTTCTCCGTTACTTGGTCATTGGCTCTTATGTCGGCCTGGCAACTGTTGGCATCTTCATCTTATGGTACACTCAAGCTTCATTTCTCGGCATCAACCTAGTCAGTGACGGGCACACTCTCGTCGAACTTTCTCAACTTCGAAATTGGCGAGAGTGCAGCTCATGGTCAAATTTCACAGTAAATCCGCTTAATATAGGTGGGGGTCGCACAATCACCTTTTCGAACCCCTGTGACTATTTTTCAACTGGAAAAGTGAAGGCCATGACTCTGTCACTCTCTGTCTTGGTAGCGATTGAAATGTTCAATTCCCTGAATGCTTTATCAGAAGAAAATGGTTTGCTCATAATGCCACCTTGGAGGAACCCCTGGCTTTTGGTTGCGATGTCTGCCTCATTTGGACTGCATTGCTTAATTCTCTATGTTCCATTTTTAGCAGATGTCTTCGGCATCGTTCCGTTGAACCTAAAGGAATGGATTCTGGTTTTATTGATTTCAGCACCAGTGATTCTTCTTGATGAGGTTCTTAAATTTGTACTCCGAAGCAGAAGACGAGTGGCGAAGAAAGAAAAGATGGCATGA 3156 42.84 MEEKLLSPWALSVEKCLESFNVRLDIGLSDHVVEKCRERYGWNELSKEKGKPLWHLVLEQFDDVLVKILLVAAFISFILAYVGGGESDESGFEAYVEPFVIVLILVLNAVVGVWQESNAEKALEALKEMQCESAKVLRNGYLVPDLQARELVPGDIVELRVGDRVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTDTLLTDDCELQAKENMVFSGTTVVNGTSVCIVVGTGMNTEIGKIQTQIHEASLEESDTPLKKKLDEFGNRLTTAIGLVCLIVWVINYKNFLSWDVNDGWPTNIQFSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMTRKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTEFFTLGGKTTASRIISVEGTTYDPKDGGIVDWNCYNMDANFQAVAEISAICNDAGIYLDGHLFQASGLPTEAALKVLVEKMGIPDSKQRNNIFDTEVAAKHVINSSQVKLGCCEWWTKISKRVATLEFDRIRKSMSVIVRERSGKNRLLVKGAVEGLLERTLHVQLADGSLVQLDENCRQLLLSTLLEMSSKGLRCLGLAYKDDLGEFSNYDSESHPAHKKLLDPACYSSIESELVFVGIVGLRDPPRGEVHKAIDDCRGAGVTVMVITGDNKSTAESICREIGLFSRDESLTGSSFTGKEFMGLSTSQQKEVLSKPGGKVFSRAEPRHKQDIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVAAIAEGRSIYDNMKAFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISAWVLLRYLVIGSYVGLATVGIFILWYTQASFLGINLVSDGHTLVELSQLRNWRECSSWSNFTVNPLNIGGGRTITFSNPCDYFSTGKVKAMTLSLSVLVAIEMFNSLNALSEENGLLIMPPWRNPWLLVAMSASFGLHCLILYVPFLADVFGIVPLNLKEWILVLLISAPVILLDEVLKFVLRSRRRVAKKEKMA 1051
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 16689031 16693492 - evm.model.ptg000016l.188 HCH10g0972 553045
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0972 1051 FunFam Calcium-transporting P-type ATPase, putative 620 771 - -
HCH10g0972 1051 NCBIfam HAD-IC family P-type ATPase 302 389 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g0972 1051 NCBIfam HAD-IC family P-type ATPase 699 811 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g0972 1051 PANTHER CALCIUM-TRANSPORTING ATPASE 9 1042 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
HCH10g0972 1051 SFLD C1.7: P-type atpase like 345 778 - -
HCH10g0972 1051 Pfam E1-E2 ATPase 129 344 - -
HCH10g0972 1051 Gene3D - 59 1039 - -
HCH10g0972 1051 SUPERFAMILY Calcium ATPase, transmembrane domain M 8 1042 IPR023298 -
HCH10g0972 1051 Gene3D - 374 625 IPR023299 GO:0000166(InterPro)
HCH10g0972 1051 Pfam haloacid dehalogenase-like hydrolase 617 740 - -
HCH10g0972 1051 SUPERFAMILY HAD-like 362 830 IPR036412 -
HCH10g0972 1051 Gene3D - 361 771 IPR023214 -
HCH10g0972 1051 SFLD p-type atpase 345 778 IPR044492 -
HCH10g0972 1051 Gene3D - 27 248 - -
HCH10g0972 1051 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 371 622 IPR023299 GO:0000166(InterPro)
HCH10g0972 1051 SUPERFAMILY Calcium ATPase, transduction domain A 134 243 IPR008250 -
HCH10g0972 1051 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 374 625 - -
HCH10g0972 1051 Coils Coil 119 139 - -
HCH10g0972 1051 PRINTS P-type cation-transporting ATPase superfamily signature 726 745 - -
HCH10g0972 1051 PRINTS P-type cation-transporting ATPase superfamily signature 640 650 - -
HCH10g0972 1051 PRINTS P-type cation-transporting ATPase superfamily signature 750 762 - -
HCH10g0972 1051 PRINTS P-type cation-transporting ATPase superfamily signature 364 378 - -
HCH10g0972 1051 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
HCH10g0972 1051 PRINTS P-type cation-transporting ATPase superfamily signature 618 629 - -
HCH10g0972 1051 Pfam Cation transport ATPase (P-type) 428 540 - -
HCH10g0972 1051 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 790 1044 - -
HCH10g0972 1051 FunFam Calcium-transporting ATPase, putative 110 246 - -
HCH10g0972 1051 Pfam Cation transporting ATPase, C-terminus 811 1037 IPR006068 -
HCH10g0972 1051 FunFam Calcium-transporting ATPase, putative 214 360 - -
HCH10g0972 1051 PRINTS Sodium/potassium-transporting ATPase signature 357 378 - -
HCH10g0972 1051 PRINTS Sodium/potassium-transporting ATPase signature 979 1003 - -
HCH10g0972 1051 Pfam Cation transporter/ATPase, N-terminus 9 76 IPR004014 -
HCH10g0972 1051 SMART Cation_ATPase_N_a_2 7 81 IPR004014 -
HCH10g0972 1051 ProSitePatterns E1-E2 ATPases phosphorylation site. 366 372 IPR018303 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0972 HCH-Chr10:16689031 HCH3g1300 HCH-Chr3:49579841 0.00E+00 dispersed
HCH10g0972 HCH-Chr10:16689031 HCH4g0577 HCH-Chr4:3802373 5.90E-227 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0972 K01537 - vvi:100253574 1771.52