Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0993 ATGGCTCATCTACTTCATGTTCGTGTTTTGTCATCTTTAAATTTCTACTTTCTCATAATCTTTATCTACTTCATATTCCGTAATCTCTCCCCATCTCTATGTGACACAAATAAAGGATATTTAGACTGCTTTGGGCCTTTTCAATGCTCAAATACTTCTCTAAATCTAACATATCCTTTCTGGGGATCAACTCGCCCTCGTCACTGCGGCCACCCAAGATTTGAACTCAATTGTTCTGGCGAAGCCCCCGTTCTATCAGTCATTTCCACCAATTACAGAATCATTGGAATCGATTATTCTTCTCAAGCTTTGAGAGTTGTGAGAATGGATTATTGGAATAGTATCTGTCCGGCTTCTGTTTCAAACTCCACCATGGATTTTACCCTCTTCAATTATACTGATGATACTTATACTTTACTATTATTCTATGATTGTTTCACCACGTCTTTTCAGTCTTCGAAGATTTTTTTTTCCCAGATGCAATTTACTGATCAACCCATGAACTGCAATTCGAAAGACTGCAGCAATAGTAACGCAAACTGCAATCAGTCTCCGGGGAACCCAAATAACCCTTATAAAATGCGTTCGGACTGCAGCAAGAGCGCAACCTGCGATCAGTCTCCGGGGAACCCAAATAACCCTAAAATGCTTTCGGACTGCAGCAAGAGCTACAGCAATCGTGCACGTGCTACGGTTAATGCTACGGTTAATACTACAGCTAACGGGACTGATTCAAATAATTTTGGTTTCTCTTGTTCCAATAGAGTAATTTCTGCGGGTTTTTACGAGCTTATCAATACAACAAACTTCTCCAGTTGGCGAGGAATCCGGCGGTGTAATACTAGTGTTATTCTTCCCATTTTTAAATCGGTGGCGGAGAAGATAGGGAATAACTCAACGCCTTCCTATTTGGTTACAGCGCTGCGGGCTGGCTTTGGATTGCGTTGGCATCTGGATAATTCTACTTGTGGGAATTGCCGGGTCTCTGGCGGCGCGTGTGGTTCCAACCCGACCTCGGGTGAATTCACTTGCTACTGCAAGACCGGATCATATCCATTCGAATGCGGAAAGGCATCGTCTTCAAAGTCTAGTTGGTGGATCAGAGTTGTCATAGGAATTTTCATAGCTTTAGCTGTACTTATCATCATAGTCATCTCCATCTACTACTACAGAAAGAAGCGTGTATTCAGTAACCAAATTGAGGAGATTATAAGCACTTATCATTCACAAATTCCAAAGCGATATCCTTACAACGAAGTGAAGAAAATGACTCAATTATTCAAAGAAAAAATTGGTCGAGGAGGATATAGTACTGTTTATAAAGGAAAGCTGTCAAATGGTAAAGAAATCGCTGTGAAACTTTTGAACAAATCCAAAGGTGGTGATATGAGAGAGTTTATGAACGAAGTTTCTAGCATCAGTAAAACTTCCCATGTGAATGTAGTCACTCTTCTGGGGTTTTGCTTTGAGTGGAACAAAAGAGTTTTAATTTATGAATTTATGCCGAAAGGTTCTTTGGAGAAGTACACGTATCGTAGAGGGCTTTCAAGTAACGATTGCAAACTGGATTGGGATACACTCTACAAAATTGTTCTTGGAATTGCAAGAGGTTTGGAGTATCTCCATCTTGGTTGTAACACACAAATTCTTCATTTTGACATAAAGCCACATAACATTCTTCTCGATGAAGATTTTTGTCCCAAAATATCGGATTTTGGCCTGTCGAAACAATGCAAAATAAAGGAAAGTCACGTCTCAATGACGAATCCTCGAGGAACTCCGGGATTTATAGCTCCTGAAGTATACAGTCGAAGCCTTGCTAGAGTTACTCACAAGTCAGACGTCTATAGCTTTGGAATGTTGATTCTTGAATTGGTTGGTGAAAGAAAGTGTCCCAATGAAGATTTATCTGAAAAGAGTGAAGAATATTTCCCTGATTGGATATATAATGATCTTCAACAAAGCAAAGATATGAACGTATATTGGGCGACAATGACAAAAGAGGAAGAAGAAATAGCGAGAAAGTTGATAACTGTGAGTCTAAGTTGCATTCAGACAATTCCATCGACCAGGCCATCAATGAGTGAGGTGATTGAGATGCTGGGAAGAAGTCTTGATCGCTTACAAATACCACCAAAACCTTCTTTACTTCTAGTAGAATCATCACATTAA 2172 39.87 MAHLLHVRVLSSLNFYFLIIFIYFIFRNLSPSLCDTNKGYLDCFGPFQCSNTSLNLTYPFWGSTRPRHCGHPRFELNCSGEAPVLSVISTNYRIIGIDYSSQALRVVRMDYWNSICPASVSNSTMDFTLFNYTDDTYTLLLFYDCFTTSFQSSKIFFSQMQFTDQPMNCNSKDCSNSNANCNQSPGNPNNPYKMRSDCSKSATCDQSPGNPNNPKMLSDCSKSYSNRARATVNATVNTTANGTDSNNFGFSCSNRVISAGFYELINTTNFSSWRGIRRCNTSVILPIFKSVAEKIGNNSTPSYLVTALRAGFGLRWHLDNSTCGNCRVSGGACGSNPTSGEFTCYCKTGSYPFECGKASSSKSSWWIRVVIGIFIALAVLIIIVISIYYYRKKRVFSNQIEEIISTYHSQIPKRYPYNEVKKMTQLFKEKIGRGGYSTVYKGKLSNGKEIAVKLLNKSKGGDMREFMNEVSSISKTSHVNVVTLLGFCFEWNKRVLIYEFMPKGSLEKYTYRRGLSSNDCKLDWDTLYKIVLGIARGLEYLHLGCNTQILHFDIKPHNILLDEDFCPKISDFGLSKQCKIKESHVSMTNPRGTPGFIAPEVYSRSLARVTHKSDVYSFGMLILELVGERKCPNEDLSEKSEEYFPDWIYNDLQQSKDMNVYWATMTKEEEEIARKLITVSLSCIQTIPSTRPSMSEVIEMLGRSLDRLQIPPKPSLLLVESSH 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22734645 22737212 - evm.model.ptg000009l.123 HCH10g0993 553066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0993 723 SUPERFAMILY Protein kinase-like (PK-like) 401 701 IPR011009 -
HCH10g0993 723 Pfam Wall-associated receptor kinase C-terminal 272 348 IPR032872 -
HCH10g0993 723 PANTHER RUST RESISTANCE KINASE LR10-RELATED 260 716 IPR045874 GO:0004672(InterPro)
HCH10g0993 723 Pfam Wall-associated receptor kinase galacturonan-binding 48 108 IPR025287 GO:0030247(InterPro)
HCH10g0993 723 SMART serkin_6 425 708 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0993 723 Pfam Protein kinase domain 428 699 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0993 723 FunFam serine/threonine-protein kinase PBS1-like 394 500 - -
HCH10g0993 723 ProSitePatterns Protein kinases ATP-binding region signature. 431 453 IPR017441 GO:0005524(InterPro)
HCH10g0993 723 Gene3D Phosphorylase Kinase; domain 1 397 500 - -
HCH10g0993 723 ProSiteProfiles Protein kinase domain profile. 425 716 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0993 723 Gene3D Transferase(Phosphotransferase) domain 1 501 710 - -
HCH10g0993 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0993 723 FunFam PR5-like receptor kinase 501 713 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0993 HCH-Chr10:22734645 HCH10g1374 HCH-Chr10:46276890 1.60E-61 dispersed
HCH10g0993 HCH-Chr10:22734645 HCH3g0186 HCH-Chr3:1194566 2.20E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81004 PF00069 Pkinase 7.40E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0993 - - - 0.0