Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g1013 | ATGAGTGGAGGAGGAAGAGAAGCTAATCAGGAGAGAAATCAAAATCGGGATTCGGAAACGGAAACGGAAACGGATGAGGGAGAGTATCAAGTGGAGAGCGTACGGGAACGAATTAAATCGTCGCGAGGGAGCAGATTCAATTTGATTCAAAACCAATTCAGCCTCGAATCGACGACTCATAGGAGATTTAGTCGCGAAAATCTTATAAATGGTATCAAGTTCCTCGTTATTCATCCTGATAGCAGATGGTATAGAGCGTGGACGAAGTTCATACTGTTATGGGCATTGTACTCTTCCTTCTTTACACCGATGGAATTCGGGTTTTTCAGGGGATTGCCTGAAAATCTCTTTATATTGGACATTGTTGGACAATTAGCTTTCCTCGTTGACATTATCTTGCAGTTTCTTCTTGCTTATAGAGACAAACAGACTTATCGAATGATCTATAAGCGCACTCCTATAGCACTGAGATACTTGAAATCCACTTTCGTGATTGATTTTCTTAGTTGTATGCCTTGGGATATTATCTATAAGGCTTGTGGGAGAAGAGAGGAGGTGAGATACCTCCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCGATGGTTTTTTTAAGAATATGGAGAAGGATATACGTATTAATTATATGTTTACCAGGATCGTTAAGCTTCTTGCTGTTGAACTTTACTGTACACATACTGCTGCCTGCATCTTTTACTATTTGGCAACTACTCTTCCTTCTTCCGAAGAAGGTTACACATGGATTGGGAGCTTAAAATTGGGTGACTACAGCTACTCACATTTTAGGGAAATTGACATATGGAAACGCTACACCACATCTTTATACTTTGCTATAGTTACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTGAGAGAAATGATATTCATAATGATTTATGTCTCATTCGACATGGTTCTTGGTGCTTATTTGATTGGTAATATGACCGCATTGATAGTTAAAGGATCCAAGACAGTCAAGTTCAGGGACAAAATGACAGATGTAATCAAATACATGAACAGAAATAGACTTGGTAGGGATATCCGTGATCAGATCAAAGGTCACTTGCGTTTACAGTACGAGAGTAGCTACACTGAGGCTTCAGTTCTTCAGGACATCCCAATATCAATCCGTGCTAAGATTTCACAAACATTGTACTTGCCATATATTGCAAACGTTCCTCTTTTCAACGGATGCTCTCCAGAGTTCATCAATCAAATTGTTATTAGACTCCATGAAGAGTTTTTTCTCCCTGGAGAGGTGATAATGGAGCAAGGAAATGTGGTTGATCAACTCTATTTTGTCTGTCATGGTGTGCTGGAGGAAGTGGGCATAGGGCAAGATGGTTCAGAGGAGACCATATCTTTACTACAGCCCAACAGCCCTTTCGGAGAGATTTCGATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTCTGTGAATTATGTAGGCTTTTACGCATTGACAAACAGTCTTTCACAAACATTCTTGACATTTACTTTTATGATGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAGGAATCTAACCTCAGAGTTAAGCAATTGGAGTCGGATATCACATATCATATCGGTAAGCAGGAATCTGAACTCGCTCTCAAGGTGAACAGTGCCGCATATCACGGAGATCTATACCAATTAAAAGGTCTCATCCGAGCTGGAGCTGATCCAAAAAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATGTAGAGGATACGAGGATATAACTCTTTTCCTAATTCAGGAAGGAGTAAACGTTGACCTTAAAGATAATTTTGGCAATACACCACTACTGGAAGCCATCAAGAATGGGAATGATCATATTTCTGCTTTGCTTATTAAAGAAGGTGCTTCATTGAAGATTGAGAATGCTGGTAGTTTCCTCTGTACAGCTGTTGCAAAGGGGGATTCAGATTTACTTAAGAGATTATTGTGCCATGGCATTGACCCCAACTCTAAAGATTACGATCACCGAACCCCTCTACATATAGCTGCTTCTGAAGGACTACATTTAATGGCAAAGTTGCTTTTAGAATCCGGGGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAAGCCGGATGTGTGGAAACAAGAATTTGATCAAGCTCTTGGAAGATGCAAAATCTACTCAGTTGTCAGAATTCCCTTACTCCTCGCAAAAAGTCACAGATAATAATAAGCATTCAAAGAAATGTACTGTGTTCCCTTTCCACCCATGGAATCCTGAAGAAAGTAGAAGACCTGGGATTGTGTTATGGGTTCCAGTCACTATTGAAGAGCTCATCAAAGTATCATCAGAGCAGCTACAAGTTTCAAGTGATTGTTGTATATTATCAGAAGATGCAGGTAAAATTCTTGATGTGGATATGATTGATGATGGTCAGAAGCTGTATCTAGTTCCTCAAACACATTAG | 2499 | 40.18 | MSGGGREANQERNQNRDSETETETDEGEYQVESVRERIKSSRGSRFNLIQNQFSLESTTHRRFSRENLINGIKFLVIHPDSRWYRAWTKFILLWALYSSFFTPMEFGFFRGLPENLFILDIVGQLAFLVDIILQFLLAYRDKQTYRMIYKRTPIALRYLKSTFVIDFLSCMPWDIIYKACGRREEVRYLLWIRLFRVRKVDGFFKNMEKDIRINYMFTRIVKLLAVELYCTHTAACIFYYLATTLPSSEEGYTWIGSLKLGDYSYSHFREIDIWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMTDVIKYMNRNRLGRDIRDQIKGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIANVPLFNGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETISLLQPNSPFGEISILCNIPQPYTVRVCELCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKESNLRVKQLESDITYHIGKQESELALKVNSAAYHGDLYQLKGLIRAGADPKKTDYDGRSPLHLAACRGYEDITLFLIQEGVNVDLKDNFGNTPLLEAIKNGNDHISALLIKEGASLKIENAGSFLCTAVAKGDSDLLKRLLCHGIDPNSKDYDHRTPLHIAASEGLHLMAKLLLESGASVFSKDRWGNTPLDESRMCGNKNLIKLLEDAKSTQLSEFPYSSQKVTDNNKHSKKCTVFPFHPWNPEESRRPGIVLWVPVTIEELIKVSSEQLQVSSDCCILSEDAGKILDVDMIDDGQKLYLVPQTH | 832 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 29122019 | 29143696 | - | evm.model.ptg000009l.143 | HCH10g1013 | 553086 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g1013 | 832 | SUPERFAMILY | Voltage-gated potassium channels | 78 | 330 | - | - | |
| HCH10g1013 | 832 | PRINTS | Ankyrin repeat signature | 695 | 709 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | PRINTS | Ankyrin repeat signature | 583 | 598 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 679 | 711 | - | - | |
| HCH10g1013 | 832 | Gene3D | - | 87 | 331 | - | - | |
| HCH10g1013 | 832 | FunFam | Potassium channel SKOR | 85 | 330 | - | - | |
| HCH10g1013 | 832 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| HCH10g1013 | 832 | SUPERFAMILY | cAMP-binding domain-like | 333 | 523 | IPR018490 | - | |
| HCH10g1013 | 832 | FunFam | Gated outwardly-rectifying K+ channel | 621 | 747 | - | - | |
| HCH10g1013 | 832 | Pfam | Ion transport protein | 84 | 332 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g1013 | 832 | Gene3D | Jelly Rolls | 389 | 528 | IPR014710 | - | |
| HCH10g1013 | 832 | Gene3D | Helix hairpin bin | 332 | 388 | - | - | |
| HCH10g1013 | 832 | ProSiteProfiles | KHA domain profile. | 759 | 832 | IPR021789 | - | |
| HCH10g1013 | 832 | SUPERFAMILY | Ankyrin repeat | 555 | 734 | IPR036770 | - | |
| HCH10g1013 | 832 | Pfam | Cyclic nucleotide-binding domain | 425 | 509 | IPR000595 | - | |
| HCH10g1013 | 832 | SMART | cnmp_10 | 405 | 523 | IPR000595 | - | |
| HCH10g1013 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 582 | 614 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | Gene3D | - | 539 | 647 | IPR036770 | - | |
| HCH10g1013 | 832 | CDD | CAP_ED | 405 | 519 | IPR000595 | - | |
| HCH10g1013 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 615 | 647 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | Gene3D | - | 648 | 742 | IPR036770 | - | |
| HCH10g1013 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 277 | 294 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH10g1013 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 229 | 239 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH10g1013 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 120 | 130 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH10g1013 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 321 | 330 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH10g1013 | 832 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 405 | 525 | IPR000595 | - | |
| HCH10g1013 | 832 | Pfam | KHA, dimerisation domain of potassium ion channel | 758 | 827 | IPR021789 | - | |
| HCH10g1013 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 679 | 711 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | SMART | ANK_2a | 679 | 708 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | SMART | ANK_2a | 646 | 675 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | SMART | ANK_2a | 712 | 741 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | SMART | ANK_2a | 582 | 611 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | SMART | ANK_2a | 615 | 644 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | FunFam | Potassium channel KAT2 | 393 | 529 | - | - | |
| HCH10g1013 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 615 | 646 | - | - | |
| HCH10g1013 | 832 | Pfam | Ankyrin repeats (3 copies) | 651 | 732 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | Pfam | Ankyrin repeats (3 copies) | 557 | 644 | IPR002110 | GO:0005515(InterPro) | |
| HCH10g1013 | 832 | PANTHER | POTASSIUM CHANNEL AKT1 | 38 | 827 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| HCH10g1013 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 582 | 614 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g1013 | HCH-Chr10:29122019 | HCH12g0347 | HCH-Chr12:1988391 | 1.90E-87 | dispersed | |
| HCH10g1013 | HCH-Chr10:29122019 | HCH8g0800 | HCH-Chr8:44580236 | 7.80E-89 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g1013 | K21867 | - | csv:101210912 | 1453.34 |