Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1053 ATGGCATATTTATCAGCTCTGTTGTTTGTTATTCTGATTTTCTTTCCTGTTGGAGAGTCAGATATTGCATCAGACAAGGCAGCTCTTGTTGCTCTTCAAAGAGCAATGGATAGTCGGAGTCGAACTCGATACTGGAATATCTCCGACGCTACTCCGTGCTCGTGGCTTGGTGTGACCTGCAACGGCGGTAGAGTGACCGAGCTTCGACTTCCCGGCGTCGGACTCATCGGTCAGCTTCCTTTCGGGCTCGGTAACCTTACCGGACTGCAAACTCTGTCTCTTCGACTGAACGCACTTTCGGGTTCTCTCCCGTCTGATTTTATTAAACTTCAGTCTCTTCAAAATCTGTACCTTCAATATAATTCATTTTCTAGTGAAATTCCTGAGGTTTTGTTTACTATGAAGAGTCTGGTTCGTTTGAATTTGGCTTATAATAAGTATACTGGTTTACTTTTATATGATTTCAATAATCTCACGAAATTAGAGGTCTTGAGTTTGGAAAAAAATAAGCTAACTGGGACTATTCCTGATTTCAATATTCCCGCGCTTAAGATGCTTAATGTTTCTTTTAATCATTTAAACGGATCGATTCCGTCGAAGTTTTCCGACTATCCGGTTAGCGCATTTGAAGGAAACTTGCTTTGTGGGAAGCCACTGCAGCCTTGTGATAAGGCCAGCGGAGAGAAGGAGAAGAAGAAACTATCCAGCGGAACAATTGCCGGTGTTATTATTGGAAGTTTTATTGCAGTTTTGGTCCTTGTTCTCATCCTTGTTTTTTGGAGGAGAAAAAGGAAAGGAAAATCCGGTCAAAAGGATGCCGAAACAACGTCGTCGGGAAGAATTTCATCGGAGATTGAGAATCAGGGGACAAGTAATCGAAGTATCCATACAAATTTAAAAAGTGGAGAAAATGAGAATAGAAGGAATCTGGTGTTCTGTGGGAATGTGGAAAGGGTGTTTGATTTGGAGGGATTGTTAAGAGCTTCTGCAGAGGTATTGGGAAAGGGGACTTTTGGGACAACTTATAAGGCGAATCTTGATATGGGGATGAATGTGGTTGTGAAAAGATTGAGAGATGTTGTAATCTCAGAGGATGAATTTAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCTGTTAAAGCTTGCTATTATAGCAGAGACGAGAAGCTGCTTGTTTGTGATTATGTGCCCATGGGTAGCTTATCTGTATTTCTTCATGGCGGCAAAGAGGCTGGCAGGAATCCATTGAAATGGGAAGAAAGGGCTGGAATTGCACTTGCAGCTGCTCGTGGGATTTCATATCTACATTCTCGGCGACCTCCGACCTTCCATGGAAACATCAAGTCTTCAAACATCCTTCTCCATAGATCGTTCATAGCATGTGTCTCTGACTTTGGCCTTTTTCAAATTGCAAGACCAGCATCATCCACTCCTAACCATGTCGCCGGCTATCGAGCACCGGAGGTTACCGATCCTCGAAAAGTATCTCAAAAGGCCGATGTTTACAGTTTCGGTGTGTTAATCTTAGAGCTTCTCACAGGGAAGGCCCTAAACTCACCGGTATTCAATGATGAATTCATAGATCTCCCTCGATGGGTTCGCTATCACGTCGAAGAAAAAAGGACTGCTGAGGTGTTTGATAACGAGCTTATAGAATACAAGAATGGTTTGGATGAAATGGTACAACTTTTACATCTTGCAATGTTATGCACTGCAGCACATCCGGACAGCCGCCCTTCAATGGCAAAAGTAACAAGTAGAATTGATGAAATTTATCGCTCTGTGTTACTAAAAGAACAAGAAACAAGCGATGAAATGTTCAATGAAGGAGATACTGCTATGTCCCAGAGATTTTACTCTGCAGATTCAGTGATGCCTCCATCTTCAATACAGGAAAGTTGA 1920 42.34 MAYLSALLFVILIFFPVGESDIASDKAALVALQRAMDSRSRTRYWNISDATPCSWLGVTCNGGRVTELRLPGVGLIGQLPFGLGNLTGLQTLSLRLNALSGSLPSDFIKLQSLQNLYLQYNSFSSEIPEVLFTMKSLVRLNLAYNKYTGLLLYDFNNLTKLEVLSLEKNKLTGTIPDFNIPALKMLNVSFNHLNGSIPSKFSDYPVSAFEGNLLCGKPLQPCDKASGEKEKKKLSSGTIAGVIIGSFIAVLVLVLILVFWRRKRKGKSGQKDAETTSSGRISSEIENQGTSNRSIHTNLKSGENENRRNLVFCGNVERVFDLEGLLRASAEVLGKGTFGTTYKANLDMGMNVVVKRLRDVVISEDEFKEKIESLGMMNHQNLVPVKACYYSRDEKLLVCDYVPMGSLSVFLHGGKEAGRNPLKWEERAGIALAAARGISYLHSRRPPTFHGNIKSSNILLHRSFIACVSDFGLFQIARPASSTPNHVAGYRAPEVTDPRKVSQKADVYSFGVLILELLTGKALNSPVFNDEFIDLPRWVRYHVEEKRTAEVFDNELIEYKNGLDEMVQLLHLAMLCTAAHPDSRPSMAKVTSRIDEIYRSVLLKEQETSDEMFNEGDTAMSQRFYSADSVMPPSSIQES 639
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 35604595 35607019 - evm.model.ptg000009l.183 HCH10g1053 553126
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1053 639 ProSiteProfiles Protein kinase domain profile. 327 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g1053 639 SUPERFAMILY Protein kinase-like (PK-like) 331 592 IPR011009 -
HCH10g1053 639 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
HCH10g1053 639 Gene3D Transferase(Phosphotransferase) domain 1 402 621 - -
HCH10g1053 639 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
HCH10g1053 639 Gene3D Ribonuclease Inhibitor 24 130 IPR032675 -
HCH10g1053 639 Gene3D Ribonuclease Inhibitor 131 214 IPR032675 -
HCH10g1053 639 MobiDBLite consensus disorder prediction 272 299 - -
HCH10g1053 639 Gene3D Phosphorylase Kinase; domain 1 301 401 - -
HCH10g1053 639 SUPERFAMILY L domain-like 37 203 - -
HCH10g1053 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 402 608 - -
HCH10g1053 639 FunFam pollen receptor-like kinase 1 296 401 - -
HCH10g1053 639 PANTHER OS05G0588300 PROTEIN 7 604 IPR050994 -
HCH10g1053 639 Pfam Leucine Rich Repeat 112 132 IPR001611 GO:0005515(InterPro)
HCH10g1053 639 Pfam Leucine Rich Repeat 183 202 IPR001611 GO:0005515(InterPro)
HCH10g1053 639 Pfam Protein tyrosine and serine/threonine kinase 331 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g1053 639 MobiDBLite consensus disorder prediction 268 300 - -
HCH10g1053 639 FunFam Probable inactive receptor kinase RLK902 22 179 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1053 HCH-Chr10:35604595 HCH9g0433 HCH-Chr9:2730744 7.40E-148 dispersed
HCH10g1053 HCH-Chr10:35604595 HCH10g1060 HCH-Chr10:37009170 3.80E-35 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81006 PF07714 PK_Tyr_Ser-Thr 7.30E-34 CL0016 HCH PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1053 - - - 0.0