Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g1072 ATGGTTCTTTCCAAGACTGCATCAGAGTCAGATGTCTCCATCCATTCAACTTTTGCTTCTCGATATGTCAGGACCTCTCTTCCAAGATTCAAAATGCCAGAAAATTCGATTCCAAAGGAAGCTGCGTATCAGATCATAAACGATGAGCTGATGCTGGATGGGAATCCAAGGCTGAATCTGGCTTCCTTTGTCACCACTTGGATGGAGCCTGAATGTGATAAACTCATCATGGCTTCTGTTAATAAAAATTACGTTGATATGGATGAATATCCTGTCACCACCGAGCTTCAGAATCGATGCGTGAACATAATAGCTCATCTATTCAACGCACCGTTGGGTGACTCAGAGACGGCGGTGGGAGTGGGAACGGTGGGATCGTCGGAGGCAATAATGTTGGCTGGTTTGGCTTTCAAGAGAAGGTGGCAAAACAAAATGAAAGCTGAAGGCAAGCCCTATGACAAGCCCAACATTGTTACTGGAGCAAATGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTCGAGGTAGAGTTGAAGGAGGTGAAATTGAAAGAAGATTACTATGTGATGGATCCAGAAAAAGCAGTGGAATTAGTTGATGAAAACACCATCTGTGTTGCTGCTATCTTGGGTTCTACTCTCAATGGAGAATTTGAAGATGTGAAGCTCTTAAATGATCTCTTAACTGAGAAGAATAGTGTAACTGGATGGGATACTCCAATCCATGTTGATGCAGCAAGTGGAGGGTTTATTGCTCCATTCATTTACCCAGAATTAGAATGGGACTTCAGGTTGCCTCTAGTGAAGAGCATTAATGTGAGTGGTCATAAGTATGGGCTTGTTTATGCTGGGATTGGTTGGGTTATTTGGAGAAACAAAGAAGATTTGCCTGAAGAACTTATCTTCCATATCAACTATCTTGGTGCTGATCAGCCAACTTTCACTCTCAATTTCTCTAAAGGTTCTAGCCAAATTATTGCTCAGTACTACCAATTAATTCGCTTGGGTTATGAGGGATACCAAAATGTGATGGAAAACTGCCGAGAAAACATGATTGTACTAAAGGAAGGACTAGAGAAAACAGGTCGCTTCAATATAGTATCCAAAGACAATGGAGTTCCATTGGTAGCATTCTCCTTAAAAGACAACTCACGACACACAGAGTTTGAGGTTTCGGAAATGTTGAGAAGGTTCGGATGGATTGTGCCTGCGTACACCATGCCACCTGATGCACAACACATCACAGTGTTGCGTGTTGTTATTAGAGAAGACTTTTCTCGAACCCTAGCTGAGCGTCTTGTGGCAGACATTGAGAAAGTGTTGCACGAACTCGATTCCCTTCCGTCTAAGGCCGATTTCAAGGTCGCTGTTGCCGGAGAAGAAGCGCAGCAAAACGACGTCGTAGTTGCCAAGAAGAGTGCCCTTGAGACACAGAGGGAGATCACTACTGTTTGGAGAAAGTTTGTGTTGAACAAGAAGAAGACGAATGGAGTTTGCTAG 1500 43.27 MVLSKTASESDVSIHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASVNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRRWQNKMKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEDYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNSVTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYQNVMENCRENMIVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDNSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVADIEKVLHELDSLPSKADFKVAVAGEEAQQNDVVVAKKSALETQREITTVWRKFVLNKKKTNGVC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 38139996 38147960 - evm.model.ptg000009l.202 HCH10g1072 553145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g1072 499 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
HCH10g1072 499 Gene3D - 1 65 - -
HCH10g1072 499 FunFam Glutamate decarboxylase 66 360 - -
HCH10g1072 499 FunFam Glutamate decarboxylase 1 65 - -
HCH10g1072 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
HCH10g1072 499 FunFam Glutamate decarboxylase 361 448 - -
HCH10g1072 499 CDD DOPA_deC_like 59 439 - -
HCH10g1072 499 Gene3D - 361 448 - -
HCH10g1072 499 Gene3D - 66 360 IPR015421 -
HCH10g1072 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
HCH10g1072 499 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1072 HCH-Chr10:38139996 HCH3g0016 HCH-Chr3:148314 1.00E-221 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g1072 K01580 - csv:101216119 958.362